Analysis of interatomic Contacts of Structural Units in PDB entry:
1WVF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WVF entry

There is 1 chain in PDB entry 1WVF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 7PHE 521
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1WVF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 30Right-handed alpha
Helix 2
2
A
37 46Right-handed alpha
Helix 3
3
A
52 57Right-handed 310
Helix 4
4
A
66 81Right-handed alpha
Helix 5
5
A
133 144Right-handed alpha
Helix 6
6
A
160 167Right-handed alpha
Helix 7
7
A
177 180Right-handed 310
Helix 8
8
A
198 202Right-handed 310
Helix 9
9
A
219 224Right-handed alpha
Helix 10
10
A
254 256Right-handed 310
Helix 11
11
A
257 271Right-handed alpha
Helix 12
12
A
283 290Right-handed alpha
Helix 13
13
A
293 297Right-handed 310
Helix 14
14
A
305 317Right-handed alpha
Helix 15
15
A
330 349Right-handed alpha
Helix 16
16
A
356 360Right-handed alpha
Helix 17
17
A
364 373Right-handed alpha
Helix 18
18
A
378 386Right-handed 310
Helix 19
19
A
402 420Right-handed alpha
Helix 20
20
A
447 468Right-handed alpha
Helix 21
21
A
476 478Right-handed 310
Helix 22
22
A
479 487Right-handed alpha
Helix 23
23
A
488 503Right-handed alpha
Helix 24
24
A
511 515Right-handed 310
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There are 5 sheets in PDB entry 1WVF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 35first strand
Strand 2
A
60 63anti-parallel
Strand 3
A
106 109parallel
Strand 4
A
84 87parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 120first strand
Strand 2
A
125 128anti-parallel
Strand 3
A
230 237anti-parallel
Strand 4
A
182 188anti-parallel
Strand 5
A
194 196anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 149first strand
Strand 2
A
239 240anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 355first strand
Strand 2
A
244 252anti-parallel
Strand 3
A
321 329anti-parallel
Strand 4
A
278 282anti-parallel
Strand 5
A
426 430anti-parallel
Strand 6
A
434 444anti-parallel
Strand 7
A
390 395anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 355first strand
Strand 2
A
244 252anti-parallel
Strand 3
A
321 329anti-parallel
Strand 4
A
278 282anti-parallel
Strand 5
A
426 430anti-parallel
Strand 6
A
434 444anti-parallel
Strand 7
A
398 400anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il