Analysis of interatomic Contacts of Structural Units in PDB entry:
1WVG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WVG entry

There are 2 chains in PDB entry 1WVG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3ALA 358
B
 SER 1003SER 1357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 1WVG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 10Right-handed alpha
Helix 2
2
A
21 34Right-handed alpha
Helix 3
3
A
50 55Right-handed alpha
Helix 4
4
A
56 60Right-handed 310
Helix 5
5
A
70 82Right-handed alpha
Helix 6
6
A
94 101Right-handed alpha
Helix 7
7
A
101 124Right-handed alpha
Helix 8
8
A
134 138Right-handed 310
Helix 9
9
A
157 178Right-handed alpha
Helix 10
10
A
179 181Right-handed 310
Helix 11
11
A
182 187Right-handed alpha
Helix 12
12
A
208 219Right-handed alpha
Helix 13
13
A
237 254Right-handed alpha
Helix 14
14
A
254 259Right-handed alpha
Helix 15
15
A
267 271Right-handed 310
Helix 16
16
A
273 286Right-handed alpha
Helix 17
17
A
309 316Right-handed alpha
Helix 18
18
A
323 340Right-handed alpha
Helix 19
19
A
343 358Right-handed alpha
Helix 20
20
B
1005 1010Right-handed alpha
Helix 21
21
B
1021 1034Right-handed alpha
Helix 22
22
B
1050 1055Right-handed alpha
Helix 23
23
B
1056 1061Right-handed alpha
Helix 24
24
B
1070 1082Right-handed alpha
Helix 25
25
B
1094 1101Right-handed alpha
Helix 26
26
B
1101 1110Right-handed alpha
Helix 27
27
B
1110 1124Right-handed alpha
Helix 28
28
B
1134 1138Right-handed 310
Helix 29
29
B
1157 1178Right-handed alpha
Helix 30
30
B
1208 1219Right-handed alpha
Helix 31
31
B
1237 1255Right-handed alpha
Helix 32
32
B
1256 1259Right-handed 310
Helix 33
33
B
1267 1271Right-handed 310
Helix 34
34
B
1274 1286Right-handed alpha
Helix 35
35
B
1309 1317Right-handed alpha
Helix 36
36
B
1323 1340Right-handed alpha
Helix 37
37
B
1343 1356Right-handed alpha
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There are 8 sheets in PDB entry 1WVG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 65first strand
Strand 2
A
37 42parallel
Strand 3
A
13 17parallel
Strand 4
A
85 88parallel
Strand 5
A
128 132parallel
Strand 6
A
189 195parallel
Strand 7
A
261 264parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 199first strand
Strand 2
A
234 236parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 225first strand
Strand 2
A
291 293parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1062 1065first strand
Strand 2
B
1037 1042parallel
Strand 3
B
1013 1017parallel
Strand 4
B
1085 1088parallel
Strand 5
B
1128 1132parallel
Strand 6
B
1189 1194parallel
Strand 7
B
1261 1263parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1146 1147first strand
Strand 2
B
1306 1307parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1198 1199first strand
Strand 2
B
1235 1236parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1223 1225first strand
Strand 2
B
1291 1293parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1231 1232first strand
Strand 2
B
1272 1273anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il