Analysis of interatomic Contacts of Structural Units in PDB entry:
1WVI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1WVI entry

There are 4 chains in PDB entry 1WVI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 1002	PHE 1254
B	THR 2002	PHE 2254
C	THR 3002	PHE 3254
D	THR 4002	PHE 4254

There are 48 helices in PDB entry 1WVI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	1021	1035	Right-handed alpha
Helix 2	2	A	1048	1061	Right-handed alpha
Helix 3	3	A	1065	1067	Right-handed 310
Helix 4	4	A	1072	1084	Right-handed alpha
Helix 5	5	A	1094	1104	Right-handed alpha
Helix 6	6	A	1125	1138	Right-handed alpha
Helix 7	7	A	1160	1173	Right-handed alpha
Helix 8	8	A	1183	1195	Right-handed alpha
Helix 9	9	A	1197	1199	Right-handed 310
Helix 10	10	A	1211	1218	Right-handed alpha
Helix 11	11	A	1234	1238	Right-handed 310
Helix 12	12	A	1248	1252	Right-handed 310
Helix 13	13	B	2021	2035	Right-handed alpha
Helix 14	14	B	2048	2061	Right-handed alpha
Helix 15	15	B	2065	2067	Right-handed 310
Helix 16	16	B	2072	2084	Right-handed alpha
Helix 17	17	B	2094	2104	Right-handed alpha
Helix 18	18	B	2125	2138	Right-handed alpha
Helix 19	19	B	2160	2173	Right-handed alpha
Helix 20	20	B	2183	2195	Right-handed alpha
Helix 21	21	B	2197	2199	Right-handed 310
Helix 22	22	B	2211	2218	Right-handed alpha
Helix 23	23	B	2234	2238	Right-handed 310
Helix 24	24	B	2248	2252	Right-handed 310
Helix 25	25	C	3021	3035	Right-handed alpha
Helix 26	26	C	3048	3061	Right-handed alpha
Helix 27	27	C	3065	3067	Right-handed 310
Helix 28	28	C	3072	3084	Right-handed alpha
Helix 29	29	C	3094	3104	Right-handed alpha
Helix 30	30	C	3125	3138	Right-handed alpha
Helix 31	31	C	3160	3173	Right-handed alpha
Helix 32	32	C	3183	3195	Right-handed alpha
Helix 33	33	C	3197	3199	Right-handed 310
Helix 34	34	C	3211	3218	Right-handed alpha
Helix 35	35	C	3234	3238	Right-handed 310
Helix 36	36	C	3248	3252	Right-handed 310
Helix 37	37	D	4021	4035	Right-handed alpha
Helix 38	38	D	4048	4061	Right-handed alpha
Helix 39	39	D	4065	4067	Right-handed 310
Helix 40	40	D	4072	4084	Right-handed alpha
Helix 41	41	D	4094	4104	Right-handed alpha
Helix 42	42	D	4125	4138	Right-handed alpha
Helix 43	43	D	4160	4173	Right-handed alpha
Helix 44	44	D	4183	4195	Right-handed alpha
Helix 45	45	D	4197	4199	Right-handed 310
Helix 46	46	D	4211	4218	Right-handed alpha
Helix 47	47	D	4234	4238	Right-handed 310
Helix 48	48	D	4248	4252	Right-handed 310

There are 16 sheets in PDB entry 1WVI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1069	1071	first strand
Strand 2	A	1038	1042	parallel
Strand 3	A	1005	1009	parallel
Strand 4	A	1201	1205	parallel
Strand 5	A	1221	1225	parallel
Strand 6	A	1244	1246	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1015	1016	first strand
Strand 2	A	1019	1020	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1107	1108	first strand
Strand 2	A	1088	1092	parallel
Strand 3	A	1115	1118	parallel
Strand 4	A	1141	1144	parallel
Strand 5	A	1177	1178	parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1150	1153	first strand
Strand 2	A	1156	1159	anti-parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2069	2071	first strand
Strand 2	B	2038	2042	parallel
Strand 3	B	2005	2009	parallel
Strand 4	B	2201	2205	parallel
Strand 5	B	2221	2225	parallel
Strand 6	B	2244	2246	parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2015	2016	first strand
Strand 2	B	2019	2020	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2107	2108	first strand
Strand 2	B	2088	2092	parallel
Strand 3	B	2115	2118	parallel
Strand 4	B	2141	2144	parallel
Strand 5	B	2177	2178	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2150	2153	first strand
Strand 2	B	2156	2159	anti-parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3069	3071	first strand
Strand 2	C	3038	3042	parallel
Strand 3	C	3005	3009	parallel
Strand 4	C	3201	3205	parallel
Strand 5	C	3221	3225	parallel
Strand 6	C	3244	3246	parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3015	3016	first strand
Strand 2	C	3019	3020	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3107	3108	first strand
Strand 2	C	3088	3092	parallel
Strand 3	C	3115	3118	parallel
Strand 4	C	3141	3144	parallel
Strand 5	C	3177	3178	parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3150	3153	first strand
Strand 2	C	3156	3159	anti-parallel

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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4069	4071	first strand
Strand 2	D	4038	4042	parallel
Strand 3	D	4005	4009	parallel
Strand 4	D	4201	4205	parallel
Strand 5	D	4221	4225	parallel
Strand 6	D	4244	4246	parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4015	4016	first strand
Strand 2	D	4019	4020	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4107	4108	first strand
Strand 2	D	4088	4092	parallel
Strand 3	D	4115	4118	parallel
Strand 4	D	4141	4144	parallel
Strand 5	D	4177	4178	parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4150	4153	first strand
Strand 2	D	4156	4159	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1WVI

Analysis of interatomic Contacts of Structural Units in PDB entry:
1WVI