Analysis of interatomic Contacts of Structural Units in PDB entry:
1WVM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WVM entry

There are 6 chains in PDB entry 1WVM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1PRO 435
B
 ALA 1THR 436
C
 PHE 1PHE 1
C
 LEU 3LEU 3
D
 PHE 1PHE 1
D
 LEU 3LEU 3
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1WVM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 11Right-handed alpha
Helix 2
2
A
12 16Right-handed 310
Helix 3
3
A
20 23Right-handed 310
Helix 4
4
A
64 75Right-handed alpha
Helix 5
5
A
109 120Right-handed alpha
Helix 6
6
A
136 149Right-handed alpha
Helix 7
7
A
227 230Right-handed 310
Helix 8
8
A
290 301Right-handed alpha
Helix 9
9
A
337 346Right-handed alpha
Helix 10
10
A
367 386Right-handed alpha
Helix 11
11
A
390 402Right-handed alpha
Helix 12
12
A
420 431Right-handed alpha
Helix 13
13
B
5 11Right-handed alpha
Helix 14
14
B
20 23Right-handed 310
Helix 15
15
B
64 75Right-handed alpha
Helix 16
16
B
109 120Right-handed alpha
Helix 17
17
B
136 149Right-handed alpha
Helix 18
18
B
227 230Right-handed 310
Helix 19
19
B
290 301Right-handed alpha
Helix 20
20
B
337 345Right-handed alpha
Helix 21
21
B
346 348Right-handed 310
Helix 22
22
B
367 384Right-handed alpha
Helix 23
23
B
390 402Right-handed alpha
Helix 24
24
B
420 431Right-handed alpha
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There are 13 sheets in PDB entry 1WVM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 47first strand
Strand 2
A
92 97parallel
Strand 3
A
25 30parallel
Strand 4
A
125 128parallel
Strand 5
A
152 156parallel
Strand 6
A
174 180parallel
Strand 7
A
196 201parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
103 104anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 208first strand
Strand 2
A
362 365anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 225first strand
Strand 2
A
214 221anti-parallel
Strand 3
A
351 360anti-parallel
Strand 4
A
252 263anti-parallel
Strand 5
A
275 280parallel
Strand 6
A
305 309parallel
Strand 7
A
333 336parallel
Strand 8
A
232 233anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 225first strand
Strand 2
A
214 221anti-parallel
Strand 3
A
351 360anti-parallel
Strand 4
A
252 263anti-parallel
Strand 5
A
266 268anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 246first strand
Strand 2
A
235 239anti-parallel
Strand 3
A
321 323parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 3first strand
Strand 2
B
81 82parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 47first strand
Strand 2
B
92 97parallel
Strand 3
B
25 30parallel
Strand 4
B
125 128parallel
Strand 5
B
152 156parallel
Strand 6
B
174 180parallel
Strand 7
B
196 201parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 100first strand
Strand 2
B
103 104anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
205 208first strand
Strand 2
B
362 365anti-parallel
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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 225first strand
Strand 2
B
214 221anti-parallel
Strand 3
B
351 360anti-parallel
Strand 4
B
252 263anti-parallel
Strand 5
B
275 280parallel
Strand 6
B
305 309parallel
Strand 7
B
333 336parallel
Strand 8
B
232 233anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 225first strand
Strand 2
B
214 221anti-parallel
Strand 3
B
351 360anti-parallel
Strand 4
B
252 263anti-parallel
Strand 5
B
266 268anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
243 246first strand
Strand 2
B
235 240anti-parallel
Strand 3
B
321 323parallel
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