Analysis of interatomic Contacts of Structural Units in PDB entry:
1WW8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WW8 entry

There are 2 chains in PDB entry 1WW8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1SER 433
B
 ARG 3ALA 435
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 1WW8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 10Right-handed alpha
Helix 2
2
A
30 38Right-handed alpha
Helix 3
3
A
42 52Right-handed alpha
Helix 4
4
A
55 60Right-handed alpha
Helix 5
5
A
61 63Right-handed 310
Helix 6
6
A
81 86Right-handed alpha
Helix 7
7
A
86 102Right-handed alpha
Helix 8
8
A
114 126Right-handed alpha
Helix 9
9
A
127 129Right-handed 310
Helix 10
10
A
140 153Right-handed alpha
Helix 11
11
A
160 180Right-handed alpha
Helix 12
12
A
195 209Right-handed alpha
Helix 13
13
A
211 213Right-handed 310
Helix 14
14
A
233 238Right-handed alpha
Helix 15
15
A
241 246Right-handed alpha
Helix 16
16
A
256 262Right-handed alpha
Helix 17
17
A
279 284Right-handed alpha
Helix 18
18
A
303 310Right-handed alpha
Helix 19
19
A
327 330Right-handed 310
Helix 20
20
A
331 342Right-handed alpha
Helix 21
21
A
348 362Right-handed alpha
Helix 22
22
A
377 395Right-handed alpha
Helix 23
23
A
403 422Right-handed alpha
Helix 24
24
A
424 429Right-handed alpha
Helix 25
25
B
3 10Right-handed alpha
Helix 26
26
B
30 38Right-handed alpha
Helix 27
27
B
42 52Right-handed alpha
Helix 28
28
B
55 60Right-handed alpha
Helix 29
29
B
61 63Right-handed 310
Helix 30
30
B
82 102Right-handed alpha
Helix 31
31
B
114 126Right-handed alpha
Helix 32
32
B
127 129Right-handed 310
Helix 33
33
B
140 153Right-handed alpha
Helix 34
34
B
162 180Right-handed alpha
Helix 35
35
B
183 187Right-handed 310
Helix 36
36
B
195 208Right-handed alpha
Helix 37
37
B
211 213Right-handed 310
Helix 38
38
B
233 238Right-handed alpha
Helix 39
39
B
241 246Right-handed alpha
Helix 40
40
B
256 262Right-handed alpha
Helix 41
41
B
279 284Right-handed alpha
Helix 42
42
B
303 310Right-handed alpha
Helix 43
43
B
327 330Right-handed 310
Helix 44
44
B
331 342Right-handed alpha
Helix 45
45
B
348 362Right-handed alpha
Helix 46
46
B
377 395Right-handed alpha
Helix 47
47
B
403 421Right-handed alpha
Helix 48
48
B
421 430Right-handed alpha
Helix 49
49
B
431 433Right-handed 310
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There are 5 sheets in PDB entry 1WW8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 24first strand
Strand 2
B
20 24anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 109first strand
Strand 2
A
65 70parallel
Strand 3
A
131 134parallel
Strand 4
A
157 159parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 227first strand
Strand 2
A
215 221anti-parallel
Strand 3
A
189 192parallel
Strand 4
A
266 269parallel
Strand 5
A
290 294parallel
Strand 6
A
312 315parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 109first strand
Strand 2
B
65 70parallel
Strand 3
B
131 134parallel
Strand 4
B
157 159parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 227first strand
Strand 2
B
215 221anti-parallel
Strand 3
B
189 192parallel
Strand 4
B
266 269parallel
Strand 5
B
291 294parallel
Strand 6
B
314 315parallel
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