Analysis of interatomic Contacts of Structural Units in PDB entry:
1WWJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WWJ entry

There are 4 chains in PDB entry 1WWJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 99
B
 LYS 1006GLU 1096
C
 MET 2001ARG 2098
D
 MET 3001ARG 3098
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1WWJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 37Right-handed alpha
Helix 2
2
A
61 66Right-handed alpha
Helix 3
3
A
67 69Right-handed 310
Helix 4
4
A
70 83Right-handed alpha
Helix 5
5
B
1018 1036Right-handed alpha
Helix 6
6
B
1062 1067Right-handed alpha
Helix 7
7
B
1070 1083Right-handed alpha
Helix 8
8
C
2018 2033Right-handed alpha
Helix 9
9
C
2061 2067Right-handed alpha
Helix 10
10
C
2070 2083Right-handed alpha
Helix 11
11
D
3018 3034Right-handed alpha
Helix 12
12
D
3061 3067Right-handed alpha
Helix 13
13
D
3070 3083Right-handed alpha
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There are 5 sheets in PDB entry 1WWJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 46first strand
Strand 2
A
6 14parallel
Strand 3
A
87 96anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
B
1058 1061anti-parallel
Strand 3
B
1087 1093anti-parallel
Strand 4
B
1008 1014anti-parallel
Strand 5
B
1040 1046parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2040 2046first strand
Strand 2
C
2005 2014parallel
Strand 3
C
2087 2097anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2058 2060first strand
Strand 2
D
3058 3060anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3040 3046first strand
Strand 2
D
3006 3014parallel
Strand 3
D
3087 3096anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il