Analysis of interatomic Contacts of Structural Units in PDB entry:
1WY2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WY2 entry

There are 2 chains in PDB entry 1WY2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 351
B
 ASN 5ILE 351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1WY2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 18Right-handed alpha
Helix 2
2
A
27 36Right-handed alpha
Helix 3
3
A
58 68Right-handed alpha
Helix 4
4
A
77 86Right-handed alpha
Helix 5
5
A
98 109Right-handed alpha
Helix 6
6
A
117 126Right-handed alpha
Helix 7
7
A
129 154Right-handed alpha
Helix 8
8
A
159 174Right-handed alpha
Helix 9
9
A
189 193Right-handed 310
Helix 10
10
A
234 255Right-handed alpha
Helix 11
11
A
260 275Right-handed alpha
Helix 12
12
A
277 281Right-handed 310
Helix 13
13
B
5 18Right-handed alpha
Helix 14
14
B
27 36Right-handed alpha
Helix 15
15
B
60 68Right-handed alpha
Helix 16
16
B
77 86Right-handed alpha
Helix 17
17
B
98 110Right-handed alpha
Helix 18
18
B
117 126Right-handed alpha
Helix 19
19
B
129 154Right-handed alpha
Helix 20
20
B
159 174Right-handed alpha
Helix 21
21
B
189 193Right-handed 310
Helix 22
22
B
234 255Right-handed alpha
Helix 23
23
B
260 275Right-handed alpha
Helix 24
24
B
277 281Right-handed 310
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There are 12 sheets in PDB entry 1WY2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 75first strand
Strand 2
A
51 57parallel
Strand 3
A
44 48anti-parallel
Strand 4
A
22 25anti-parallel
Strand 5
A
90 93parallel
Strand 6
A
113 116parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 179first strand
Strand 2
A
215 217anti-parallel
Strand 3
A
220 221anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 187first strand
Strand 2
A
208 213anti-parallel
Strand 3
A
224 229anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 288first strand
Strand 2
A
295 299anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 315first strand
Strand 2
A
331 336anti-parallel
Strand 3
A
339 342anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 321first strand
Strand 2
A
325 328anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 75first strand
Strand 2
B
52 57parallel
Strand 3
B
44 47anti-parallel
Strand 4
B
22 25anti-parallel
Strand 5
B
90 93parallel
Strand 6
B
113 116parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 179first strand
Strand 2
B
215 217anti-parallel
Strand 3
B
220 221anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 187first strand
Strand 2
B
208 213anti-parallel
Strand 3
B
224 229anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
286 288first strand
Strand 2
B
295 299anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
312 315first strand
Strand 2
B
331 335anti-parallel
Strand 3
B
340 342anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
318 321first strand
Strand 2
B
325 328anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il