Analysis of interatomic Contacts of Structural Units in PDB entry:
1WY5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WY5 entry

There are 2 chains in PDB entry 1WY5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 311
B
 MET 1LEU 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 1WY5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 19Right-handed alpha
Helix 2
2
A
34 47Right-handed alpha
Helix 3
3
A
67 84Right-handed alpha
Helix 4
4
A
93 101Right-handed alpha
Helix 5
5
A
104 124Right-handed alpha
Helix 6
6
A
134 149Right-handed alpha
Helix 7
7
A
151 157Right-handed alpha
Helix 8
8
A
173 184Right-handed alpha
Helix 9
9
A
191 196Right-handed 310
Helix 10
10
A
198 207Right-handed alpha
Helix 11
11
A
207 216Right-handed alpha
Helix 12
12
A
218 248Right-handed alpha
Helix 13
13
A
255 260Right-handed alpha
Helix 14
14
A
263 276Right-handed alpha
Helix 15
15
A
279 288Right-handed alpha
Helix 16
16
A
289 291Right-handed 310
Helix 17
17
B
2 19Right-handed alpha
Helix 18
18
B
34 48Right-handed alpha
Helix 19
19
B
68 83Right-handed alpha
Helix 20
20
B
93 101Right-handed alpha
Helix 21
21
B
104 124Right-handed alpha
Helix 22
22
B
134 149Right-handed alpha
Helix 23
23
B
151 157Right-handed alpha
Helix 24
24
B
173 185Right-handed alpha
Helix 25
25
B
191 196Right-handed 310
Helix 26
26
B
198 207Right-handed alpha
Helix 27
27
B
207 213Right-handed alpha
Helix 28
28
B
218 249Right-handed alpha
Helix 29
29
B
255 260Right-handed alpha
Helix 30
30
B
263 275Right-handed alpha
Helix 31
31
B
279 291Right-handed alpha
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There are 5 sheets in PDB entry 1WY5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 91first strand
Strand 2
A
55 62parallel
Strand 3
A
26 30parallel
Strand 4
A
128 130parallel
Strand 5
A
165 166parallel
Strand 6
A
161 162anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 250first strand
Strand 2
A
253 254anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 297first strand
Strand 2
A
301 305anti-parallel
Strand 3
A
308 309anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 91first strand
Strand 2
B
55 62parallel
Strand 3
B
26 30parallel
Strand 4
B
128 130parallel
Strand 5
B
165 166parallel
Strand 6
B
161 162anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
295 297first strand
Strand 2
B
301 303anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il