Analysis of interatomic Contacts of Structural Units in PDB entry:
1WYE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WYE entry

There are 6 chains in PDB entry 1WYE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2LYS 310
B
 ALA 2LYS 310
C
 ALA 2LYS 310
D
 ALA 2LYS 310
E
 ALA 2LYS 310
F
 ALA 2LYS 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 84 helices in PDB entry 1WYE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 25Right-handed 310
Helix 2
2
A
34 46Right-handed alpha
Helix 3
3
A
59 72Right-handed alpha
Helix 4
4
A
111 116Right-handed 310
Helix 5
5
A
117 121Right-handed 310
Helix 6
6
A
122 128Right-handed alpha
Helix 7
7
A
136 142Right-handed alpha
Helix 8
8
A
142 155Right-handed alpha
Helix 9
9
A
171 185Right-handed alpha
Helix 10
10
A
195 202Right-handed alpha
Helix 11
11
A
206 215Right-handed alpha
Helix 12
12
A
253 267Right-handed alpha
Helix 13
13
A
271 288Right-handed alpha
Helix 14
14
A
298 308Right-handed alpha
Helix 15
15
B
21 25Right-handed 310
Helix 16
16
B
34 46Right-handed alpha
Helix 17
17
B
59 72Right-handed alpha
Helix 18
18
B
111 116Right-handed 310
Helix 19
19
B
117 121Right-handed 310
Helix 20
20
B
122 127Right-handed alpha
Helix 21
21
B
136 142Right-handed alpha
Helix 22
22
B
142 156Right-handed alpha
Helix 23
23
B
171 185Right-handed alpha
Helix 24
24
B
195 202Right-handed alpha
Helix 25
25
B
206 215Right-handed alpha
Helix 26
26
B
253 267Right-handed alpha
Helix 27
27
B
271 287Right-handed alpha
Helix 28
28
B
298 309Right-handed alpha
Helix 29
29
C
21 25Right-handed 310
Helix 30
30
C
34 45Right-handed alpha
Helix 31
31
C
59 72Right-handed alpha
Helix 32
32
C
112 116Right-handed 310
Helix 33
33
C
122 127Right-handed alpha
Helix 34
34
C
136 141Right-handed alpha
Helix 35
35
C
142 154Right-handed alpha
Helix 36
36
C
171 186Right-handed alpha
Helix 37
37
C
195 203Right-handed alpha
Helix 38
38
C
206 215Right-handed alpha
Helix 39
39
C
253 269Right-handed alpha
Helix 40
40
C
271 287Right-handed alpha
Helix 41
41
C
298 308Right-handed alpha
Helix 42
42
D
21 25Right-handed 310
Helix 43
43
D
34 46Right-handed alpha
Helix 44
44
D
59 73Right-handed alpha
Helix 45
45
D
111 116Right-handed 310
Helix 46
46
D
117 121Right-handed 310
Helix 47
47
D
122 127Right-handed alpha
Helix 48
48
D
136 141Right-handed alpha
Helix 49
49
D
142 156Right-handed alpha
Helix 50
50
D
171 185Right-handed alpha
Helix 51
51
D
195 203Right-handed alpha
Helix 52
52
D
206 215Right-handed alpha
Helix 53
53
D
253 268Right-handed alpha
Helix 54
54
D
271 287Right-handed alpha
Helix 55
55
D
298 308Right-handed alpha
Helix 56
56
E
21 25Right-handed 310
Helix 57
57
E
34 45Right-handed alpha
Helix 58
58
E
59 73Right-handed alpha
Helix 59
59
E
111 116Right-handed 310
Helix 60
60
E
117 121Right-handed 310
Helix 61
61
E
122 128Right-handed alpha
Helix 62
62
E
136 142Right-handed alpha
Helix 63
63
E
142 156Right-handed alpha
Helix 64
64
E
171 184Right-handed alpha
Helix 65
65
E
195 203Right-handed alpha
Helix 66
66
E
206 215Right-handed alpha
Helix 67
67
E
226 228Right-handed 310
Helix 68
68
E
253 268Right-handed alpha
Helix 69
69
E
271 288Right-handed alpha
Helix 70
70
E
298 308Right-handed alpha
Helix 71
71
F
21 25Right-handed 310
Helix 72
72
F
34 46Right-handed alpha
Helix 73
73
F
59 72Right-handed alpha
Helix 74
74
F
111 116Right-handed 310
Helix 75
75
F
117 121Right-handed 310
Helix 76
76
F
122 128Right-handed alpha
Helix 77
77
F
136 141Right-handed alpha
Helix 78
78
F
142 156Right-handed alpha
Helix 79
79
F
171 185Right-handed alpha
Helix 80
80
F
195 202Right-handed alpha
Helix 81
81
F
206 216Right-handed alpha
Helix 82
82
F
253 267Right-handed alpha
Helix 83
83
F
271 287Right-handed alpha
Helix 84
84
F
298 309Right-handed alpha
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There are 15 sheets in PDB entry 1WYE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 53first strand
Strand 2
A
3 7parallel
Strand 3
A
131 135parallel
Strand 4
A
159 162parallel
Strand 5
A
188 194parallel
Strand 6
A
218 224parallel
Strand 7
A
229 234anti-parallel
Strand 8
A
237 242anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 107first strand
Strand 2
A
89 94anti-parallel
Strand 3
A
11 16parallel
Strand 4
A
27 33anti-parallel
Strand 5
B
27 33anti-parallel
Strand 6
B
11 16anti-parallel
Strand 7
B
89 94parallel
Strand 8
B
102 107anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 57first strand
Strand 2
A
80 82parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 53first strand
Strand 2
B
3 7parallel
Strand 3
B
131 135parallel
Strand 4
B
159 162parallel
Strand 5
B
188 194parallel
Strand 6
B
218 226parallel
Strand 7
B
229 234anti-parallel
Strand 8
B
237 242anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 57first strand
Strand 2
B
80 82parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
49 53first strand
Strand 2
C
3 7parallel
Strand 3
C
131 135parallel
Strand 4
C
159 162parallel
Strand 5
C
188 194parallel
Strand 6
C
218 226parallel
Strand 7
C
229 234anti-parallel
Strand 8
C
237 242anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
102 107first strand
Strand 2
C
89 94anti-parallel
Strand 3
C
11 16parallel
Strand 4
C
27 33anti-parallel
Strand 5
D
27 33anti-parallel
Strand 6
D
11 16anti-parallel
Strand 7
D
89 94parallel
Strand 8
D
102 107anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
55 57first strand
Strand 2
C
80 82parallel
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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
49 53first strand
Strand 2
D
3 7parallel
Strand 3
D
131 135parallel
Strand 4
D
159 162parallel
Strand 5
D
188 194parallel
Strand 6
D
218 224parallel
Strand 7
D
229 234anti-parallel
Strand 8
D
237 242anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
55 57first strand
Strand 2
D
80 82parallel
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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
49 53first strand
Strand 2
E
3 7parallel
Strand 3
E
131 135parallel
Strand 4
E
159 162parallel
Strand 5
E
188 194parallel
Strand 6
E
218 224parallel
Strand 7
E
230 234anti-parallel
Strand 8
E
237 241anti-parallel
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There are 8 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
102 107first strand
Strand 2
E
89 94anti-parallel
Strand 3
E
11 16parallel
Strand 4
E
27 33anti-parallel
Strand 5
F
27 33anti-parallel
Strand 6
F
11 16anti-parallel
Strand 7
F
89 94parallel
Strand 8
F
102 107anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
55 57first strand
Strand 2
E
80 82parallel
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There are 8 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
49 53first strand
Strand 2
F
3 7parallel
Strand 3
F
131 135parallel
Strand 4
F
159 162parallel
Strand 5
F
188 194parallel
Strand 6
F
218 224parallel
Strand 7
F
230 234anti-parallel
Strand 8
F
239 241anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
55 57first strand
Strand 2
F
80 82parallel
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