Analysis of interatomic Contacts of Structural Units in PDB entry:
1WYZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WYZ entry

There are 4 chains in PDB entry 1WYZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2LYS 234
B
 GLU 2LEU 235
C
 GLU 2LEU 235
D
 GLU 2LEU 235
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 1WYZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 21Right-handed alpha
Helix 2
2
A
23 30Right-handed alpha
Helix 3
3
A
39 51Right-handed alpha
Helix 4
4
A
69 82Right-handed alpha
Helix 5
5
A
99 111Right-handed alpha
Helix 6
6
A
122 132Right-handed alpha
Helix 7
7
A
149 166Right-handed alpha
Helix 8
8
A
174 176Right-handed 310
Helix 9
9
A
177 189Right-handed alpha
Helix 10
10
A
213 217Right-handed alpha
Helix 11
11
B
16 20Right-handed 310
Helix 12
12
B
22 31Right-handed alpha
Helix 13
13
B
39 51Right-handed alpha
Helix 14
14
B
69 77Right-handed alpha
Helix 15
15
B
99 111Right-handed alpha
Helix 16
16
B
122 132Right-handed alpha
Helix 17
17
B
149 166Right-handed alpha
Helix 18
18
B
174 176Right-handed 310
Helix 19
19
B
177 189Right-handed alpha
Helix 20
20
B
214 217Right-handed 310
Helix 21
21
C
16 21Right-handed alpha
Helix 22
22
C
23 30Right-handed alpha
Helix 23
23
C
39 51Right-handed alpha
Helix 24
24
C
69 77Right-handed alpha
Helix 25
25
C
77 82Right-handed alpha
Helix 26
26
C
101 111Right-handed alpha
Helix 27
27
C
122 132Right-handed alpha
Helix 28
28
C
149 166Right-handed alpha
Helix 29
29
C
174 176Right-handed 310
Helix 30
30
C
177 189Right-handed alpha
Helix 31
31
C
214 216Right-handed 310
Helix 32
32
D
16 21Right-handed alpha
Helix 33
33
D
23 31Right-handed alpha
Helix 34
34
D
39 51Right-handed alpha
Helix 35
35
D
55 59Right-handed 310
Helix 36
36
D
69 77Right-handed alpha
Helix 37
37
D
77 83Right-handed alpha
Helix 38
38
D
100 111Right-handed alpha
Helix 39
39
D
122 132Right-handed alpha
Helix 40
40
D
149 165Right-handed alpha
Helix 41
41
D
177 189Right-handed alpha
Helix 42
42
D
213 217Right-handed alpha
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There are 6 sheets in PDB entry 1WYZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 63first strand
Strand 2
A
34 37parallel
Strand 3
A
86 89parallel
Strand 4
A
5 8parallel
Strand 5
A
115 117parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 212first strand
Strand 2
A
194 199anti-parallel
Strand 3
A
228 233anti-parallel
Strand 4
A
168 173anti-parallel
Strand 5
A
138 143parallel
Strand 6
C
138 143anti-parallel
Strand 7
C
168 173parallel
Strand 8
C
228 233anti-parallel
Strand 9
C
194 198anti-parallel
Strand 10
C
208 212anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 63first strand
Strand 2
B
34 37parallel
Strand 3
B
86 89parallel
Strand 4
B
5 7parallel
Strand 5
B
115 117parallel
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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 212first strand
Strand 2
B
194 198anti-parallel
Strand 3
B
228 233anti-parallel
Strand 4
B
168 173anti-parallel
Strand 5
B
138 143parallel
Strand 6
D
138 143anti-parallel
Strand 7
D
168 173parallel
Strand 8
D
228 233anti-parallel
Strand 9
D
194 198anti-parallel
Strand 10
D
208 212anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 63first strand
Strand 2
C
34 37parallel
Strand 3
C
86 90parallel
Strand 4
C
5 9parallel
Strand 5
C
115 117parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
60 63first strand
Strand 2
D
34 37parallel
Strand 3
D
86 89parallel
Strand 4
D
5 7parallel
Strand 5
D
115 117parallel
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