Analysis of interatomic Contacts of Structural Units in PDB entry:
1WZO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1WZO entry

There are 4 chains in PDB entry 1WZO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PRO 246
B	MET 1	PRO 246
C	MET 1	GLU 245
D	MET 1	PRO 246

There are 28 helices in PDB entry 1WZO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	31	35	Right-handed 310
Helix 2	2	A	74	76	Right-handed 310
Helix 3	3	A	112	117	Right-handed alpha
Helix 4	4	A	133	135	Right-handed 310
Helix 5	5	A	142	147	Right-handed alpha
Helix 6	6	A	186	188	Right-handed 310
Helix 7	7	A	191	201	Right-handed alpha
Helix 8	8	B	31	35	Right-handed 310
Helix 9	9	B	74	76	Right-handed 310
Helix 10	10	B	112	117	Right-handed alpha
Helix 11	11	B	133	135	Right-handed 310
Helix 12	12	B	142	147	Right-handed alpha
Helix 13	13	B	186	188	Right-handed 310
Helix 14	14	B	191	201	Right-handed alpha
Helix 15	15	C	31	35	Right-handed 310
Helix 16	16	C	74	76	Right-handed 310
Helix 17	17	C	112	117	Right-handed alpha
Helix 18	18	C	133	135	Right-handed 310
Helix 19	19	C	142	147	Right-handed alpha
Helix 20	20	C	186	188	Right-handed 310
Helix 21	21	C	191	201	Right-handed alpha
Helix 22	22	D	31	35	Right-handed 310
Helix 23	23	D	74	76	Right-handed 310
Helix 24	24	D	112	117	Right-handed alpha
Helix 25	25	D	133	135	Right-handed 310
Helix 26	26	D	142	147	Right-handed alpha
Helix 27	27	D	186	188	Right-handed 310
Helix 28	28	D	191	201	Right-handed alpha

There are 16 sheets in PDB entry 1WZO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	30	first strand
Strand 2	A	21	23	anti-parallel
Strand 3	A	11	18	anti-parallel
Strand 4	A	2	8	anti-parallel
Strand 5	A	152	159	anti-parallel
Strand 6	A	120	127	anti-parallel
Strand 7	A	98	104	anti-parallel
Strand 8	A	210	212	anti-parallel
Strand 9	A	46	50	parallel
Strand 10	A	69	73	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	37	first strand
Strand 2	A	2	8	anti-parallel
Strand 3	A	152	159	anti-parallel
Strand 4	A	78	79	parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	87	first strand
Strand 2	A	237	244	parallel
Strand 3	A	227	232	anti-parallel
Strand 4	A	170	175	anti-parallel
Strand 5	A	178	184	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	131	first strand
Strand 2	A	94	95	anti-parallel
Strand 3	A	221	222	anti-parallel

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There are 10 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	30	first strand
Strand 2	B	21	23	anti-parallel
Strand 3	B	11	18	anti-parallel
Strand 4	B	2	8	anti-parallel
Strand 5	B	152	159	anti-parallel
Strand 6	B	120	127	anti-parallel
Strand 7	B	98	104	anti-parallel
Strand 8	B	210	212	anti-parallel
Strand 9	B	46	50	parallel
Strand 10	B	69	73	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	37	first strand
Strand 2	B	2	8	anti-parallel
Strand 3	B	152	159	anti-parallel
Strand 4	B	78	79	parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	87	first strand
Strand 2	B	237	244	parallel
Strand 3	B	227	232	anti-parallel
Strand 4	B	170	175	anti-parallel
Strand 5	B	178	184	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	131	first strand
Strand 2	B	94	95	anti-parallel
Strand 3	B	221	222	anti-parallel

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There are 10 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	30	first strand
Strand 2	C	21	23	anti-parallel
Strand 3	C	11	18	anti-parallel
Strand 4	C	2	8	anti-parallel
Strand 5	C	152	159	anti-parallel
Strand 6	C	120	127	anti-parallel
Strand 7	C	98	104	anti-parallel
Strand 8	C	210	212	anti-parallel
Strand 9	C	46	50	parallel
Strand 10	C	69	73	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	37	first strand
Strand 2	C	2	8	anti-parallel
Strand 3	C	152	159	anti-parallel
Strand 4	C	78	79	parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	87	first strand
Strand 2	C	237	244	parallel
Strand 3	C	227	232	anti-parallel
Strand 4	C	170	175	anti-parallel
Strand 5	C	178	184	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	95	first strand
Strand 2	C	130	131	anti-parallel

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There are 10 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	30	first strand
Strand 2	D	21	23	anti-parallel
Strand 3	D	11	18	anti-parallel
Strand 4	D	2	8	anti-parallel
Strand 5	D	152	159	anti-parallel
Strand 6	D	120	127	anti-parallel
Strand 7	D	98	104	anti-parallel
Strand 8	D	210	212	anti-parallel
Strand 9	D	46	50	parallel
Strand 10	D	69	72	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	37	first strand
Strand 2	D	2	8	anti-parallel
Strand 3	D	152	159	anti-parallel
Strand 4	D	78	79	parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	87	first strand
Strand 2	D	237	244	parallel
Strand 3	D	227	232	anti-parallel
Strand 4	D	170	175	anti-parallel
Strand 5	D	178	184	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	131	first strand
Strand 2	D	94	95	anti-parallel
Strand 3	D	221	222	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1WZO

Analysis of interatomic Contacts of Structural Units in PDB entry:
1WZO