Analysis of interatomic Contacts of Structural Units in PDB entry:
1X0P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1X0P entry

There are 10 chains in PDB entry 1X0P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 102	SER 243
B	GLY 1002	SER 1140
C	GLY 2002	SER 2140
D	GLY 3002	SER 3140
E	GLY 4002	GLY 4142
F	GLY 5002	SER 5143
G	GLY 6002	SER 6140
H	GLY 7002	MET 7139
I	GLY 8002	GLY 8142
J	GLY 9002	SER 9140

There are 59 helices in PDB entry 1X0P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	117	136	Right-handed alpha
Helix 2	2	A	156	168	Right-handed alpha
Helix 3	3	A	199	201	Right-handed 310
Helix 4	4	A	202	213	Right-handed alpha
Helix 5	5	A	220	224	Right-handed 310
Helix 6	6	A	225	239	Right-handed alpha
Helix 7	7	B	1017	1036	Right-handed alpha
Helix 8	8	B	1056	1067	Right-handed alpha
Helix 9	9	B	1099	1101	Right-handed 310
Helix 10	10	B	1102	1113	Right-handed alpha
Helix 11	11	B	1120	1124	Right-handed 310
Helix 12	12	B	1125	1140	Right-handed alpha
Helix 13	13	C	2017	2036	Right-handed alpha
Helix 14	14	C	2056	2067	Right-handed alpha
Helix 15	15	C	2099	2101	Right-handed 310
Helix 16	16	C	2102	2113	Right-handed alpha
Helix 17	17	C	2120	2124	Right-handed 310
Helix 18	18	C	2125	2140	Right-handed alpha
Helix 19	19	D	3017	3036	Right-handed alpha
Helix 20	20	D	3056	3067	Right-handed alpha
Helix 21	21	D	3099	3101	Right-handed 310
Helix 22	22	D	3102	3113	Right-handed alpha
Helix 23	23	D	3120	3124	Right-handed 310
Helix 24	24	D	3125	3140	Right-handed alpha
Helix 25	25	E	4017	4036	Right-handed alpha
Helix 26	26	E	4056	4067	Right-handed alpha
Helix 27	27	E	4099	4101	Right-handed 310
Helix 28	28	E	4102	4113	Right-handed alpha
Helix 29	29	E	4120	4124	Right-handed 310
Helix 30	30	E	4125	4140	Right-handed alpha
Helix 31	31	F	5017	5036	Right-handed alpha
Helix 32	32	F	5056	5069	Right-handed alpha
Helix 33	33	F	5099	5101	Right-handed 310
Helix 34	34	F	5102	5113	Right-handed alpha
Helix 35	35	F	5120	5124	Right-handed 310
Helix 36	36	F	5125	5139	Right-handed alpha
Helix 37	37	G	6017	6036	Right-handed alpha
Helix 38	38	G	6056	6067	Right-handed alpha
Helix 39	39	G	6099	6101	Right-handed 310
Helix 40	40	G	6102	6113	Right-handed alpha
Helix 41	41	G	6120	6124	Right-handed 310
Helix 42	42	G	6125	6138	Right-handed alpha
Helix 43	43	H	7017	7035	Right-handed alpha
Helix 44	44	H	7056	7068	Right-handed alpha
Helix 45	45	H	7099	7101	Right-handed 310
Helix 46	46	H	7102	7113	Right-handed alpha
Helix 47	47	H	7120	7124	Right-handed 310
Helix 48	48	H	7125	7138	Right-handed alpha
Helix 49	49	I	8017	8035	Right-handed alpha
Helix 50	50	I	8056	8067	Right-handed alpha
Helix 51	51	I	8104	8113	Right-handed alpha
Helix 52	52	I	8120	8124	Right-handed 310
Helix 53	53	I	8125	8140	Right-handed alpha
Helix 54	54	J	9017	9036	Right-handed alpha
Helix 55	55	J	9056	9068	Right-handed alpha
Helix 56	56	J	9099	9101	Right-handed 310
Helix 57	57	J	9102	9113	Right-handed alpha
Helix 58	58	J	9120	9124	Right-handed 310
Helix 59	59	J	9125	9140	Right-handed alpha

There are 10 sheets in PDB entry 1X0P. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	182	first strand
Strand 2	A	103	112	anti-parallel
Strand 3	A	147	155	anti-parallel
Strand 4	A	138	144	anti-parallel
Strand 5	A	195	197	parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1072	1082	first strand
Strand 2	B	1003	1012	anti-parallel
Strand 3	B	1047	1055	anti-parallel
Strand 4	B	1038	1044	anti-parallel
Strand 5	B	1094	1097	parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2072	2082	first strand
Strand 2	C	2003	2012	anti-parallel
Strand 3	C	2047	2055	anti-parallel
Strand 4	C	2038	2044	anti-parallel
Strand 5	C	2094	2097	parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3072	3082	first strand
Strand 2	D	3003	3012	anti-parallel
Strand 3	D	3047	3055	anti-parallel
Strand 4	D	3038	3044	anti-parallel
Strand 5	D	3094	3097	parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4072	4082	first strand
Strand 2	E	4003	4012	anti-parallel
Strand 3	E	4047	4055	anti-parallel
Strand 4	E	4038	4044	anti-parallel
Strand 5	E	4094	4097	parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5072	5082	first strand
Strand 2	F	5003	5012	anti-parallel
Strand 3	F	5047	5055	anti-parallel
Strand 4	F	5038	5044	anti-parallel
Strand 5	F	5094	5097	parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	6072	6082	first strand
Strand 2	G	6003	6012	anti-parallel
Strand 3	G	6047	6055	anti-parallel
Strand 4	G	6038	6044	anti-parallel
Strand 5	G	6094	6097	parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	7072	7082	first strand
Strand 2	H	7003	7012	anti-parallel
Strand 3	H	7047	7055	anti-parallel
Strand 4	H	7038	7044	anti-parallel
Strand 5	H	7094	7097	parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	8072	8082	first strand
Strand 2	I	8003	8012	anti-parallel
Strand 3	I	8047	8055	anti-parallel
Strand 4	I	8038	8044	anti-parallel
Strand 5	I	8094	8097	parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	9072	9082	first strand
Strand 2	J	9003	9012	anti-parallel
Strand 3	J	9047	9055	anti-parallel
Strand 4	J	9038	9044	anti-parallel
Strand 5	J	9094	9097	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1X0P

Analysis of interatomic Contacts of Structural Units in PDB entry:
1X0P