Analysis of interatomic Contacts of Structural Units in PDB entry:
1X1W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1X1W entry

There are 6 chains in PDB entry 1X1W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 3ARG 110
B
 ALA 1ARG 110
C
 GLN 2ARG 110
D
 MET 0SER 89
E
 MET 0SER 89
F
 LYS 1SER 89
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 1X1W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 18Right-handed alpha
Helix 2
2
A
26 33Right-handed alpha
Helix 3
3
A
36 40Right-handed 310
Helix 4
4
A
41 46Right-handed alpha
Helix 5
5
B
6 18Right-handed alpha
Helix 6
6
B
26 33Right-handed alpha
Helix 7
7
B
36 40Right-handed 310
Helix 8
8
B
41 46Right-handed alpha
Helix 9
9
C
6 18Right-handed alpha
Helix 10
10
C
26 33Right-handed alpha
Helix 11
11
C
36 40Right-handed 310
Helix 12
12
C
41 46Right-handed alpha
Helix 13
13
D
8 10Right-handed 310
Helix 14
14
D
12 25Right-handed alpha
Helix 15
15
D
33 44Right-handed alpha
Helix 16
16
D
55 62Right-handed alpha
Helix 17
17
D
65 80Right-handed alpha
Helix 18
18
E
8 10Right-handed 310
Helix 19
19
E
12 24Right-handed alpha
Helix 20
20
E
33 44Right-handed alpha
Helix 21
21
E
55 60Right-handed alpha
Helix 22
22
E
64 80Right-handed alpha
Helix 23
23
F
8 10Right-handed 310
Helix 24
24
F
12 24Right-handed alpha
Helix 25
25
F
33 44Right-handed alpha
Helix 26
26
F
55 62Right-handed alpha
Helix 27
27
F
65 80Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 1X1W. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 25first strand
Strand 2
A
50 56parallel
Strand 3
A
71 75anti-parallel
Strand 4
A
87 91anti-parallel
Strand 5
A
96 99anti-parallel
Strand 6
A
107 110anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 25first strand
Strand 2
B
50 56parallel
Strand 3
B
71 75anti-parallel
Strand 4
B
87 91anti-parallel
Strand 5
B
96 99anti-parallel
Strand 6
B
107 109anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
24 25first strand
Strand 2
C
50 56parallel
Strand 3
C
71 75anti-parallel
Strand 4
C
87 91anti-parallel
Strand 5
C
96 99anti-parallel
Strand 6
C
107 108anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1 6first strand
Strand 2
D
49 54parallel
Strand 3
D
84 89parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 6first strand
Strand 2
E
49 54parallel
Strand 3
E
84 88parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
2 6first strand
Strand 2
F
49 54parallel
Strand 3
F
84 88parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il