Analysis of interatomic Contacts of Structural Units in PDB entry:
1XDV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1XDV entry

There are 2 chains in PDB entry 1XDV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 200ASN 1044
B
 THR 200ASN 1044
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 80 helices in PDB entry 1XDV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
200 225Right-handed alpha
Helix 2
2
A
227 233Right-handed alpha
Helix 3
3
A
238 247Right-handed alpha
Helix 4
4
A
248 269Right-handed alpha
Helix 5
5
A
279 289Right-handed alpha
Helix 6
6
A
292 303Right-handed alpha
Helix 7
7
A
306 317Right-handed alpha
Helix 8
8
A
319 328Right-handed alpha
Helix 9
9
A
330 338Right-handed alpha
Helix 10
10
A
338 343Right-handed alpha
Helix 11
11
A
344 364Right-handed alpha
Helix 12
12
A
366 380Right-handed alpha
Helix 13
13
A
380 393Right-handed alpha
Helix 14
14
A
393 403Right-handed alpha
Helix 15
15
A
419 427Right-handed alpha
Helix 16
16
A
436 440Right-handed 310
Helix 17
17
A
530 546Right-handed alpha
Helix 18
18
A
605 614Right-handed alpha
Helix 19
19
A
620 631Right-handed alpha
Helix 20
20
A
632 634Right-handed 310
Helix 21
21
A
636 649Right-handed alpha
Helix 22
22
A
681 700Right-handed alpha
Helix 23
23
A
701 706Right-handed alpha
Helix 24
24
A
707 719Right-handed alpha
Helix 25
25
A
723 740Right-handed alpha
Helix 26
26
A
770 774Right-handed 310
Helix 27
27
A
780 798Right-handed alpha
Helix 28
28
A
800 811Right-handed 310
Helix 29
29
A
813 818Right-handed alpha
Helix 30
30
A
818 841Right-handed alpha
Helix 31
31
A
844 865Right-handed alpha
Helix 32
32
A
867 879Right-handed alpha
Helix 33
33
A
880 885Right-handed alpha
Helix 34
34
A
886 892Right-handed alpha
Helix 35
35
A
894 906Right-handed alpha
Helix 36
36
A
908 922Right-handed alpha
Helix 37
37
A
930 943Right-handed alpha
Helix 38
38
A
957 974Right-handed alpha
Helix 39
39
A
984 993Right-handed alpha
Helix 40
40
A
1001 1017Right-handed alpha
Helix 41
41
B
200 225Right-handed alpha
Helix 42
42
B
227 233Right-handed alpha
Helix 43
43
B
238 247Right-handed alpha
Helix 44
44
B
248 269Right-handed alpha
Helix 45
45
B
279 289Right-handed alpha
Helix 46
46
B
292 303Right-handed alpha
Helix 47
47
B
306 317Right-handed alpha
Helix 48
48
B
319 328Right-handed alpha
Helix 49
49
B
330 338Right-handed alpha
Helix 50
50
B
338 343Right-handed alpha
Helix 51
51
B
344 364Right-handed alpha
Helix 52
52
B
366 380Right-handed alpha
Helix 53
53
B
380 393Right-handed alpha
Helix 54
54
B
393 403Right-handed alpha
Helix 55
55
B
419 427Right-handed alpha
Helix 56
56
B
436 440Right-handed 310
Helix 57
57
B
530 546Right-handed alpha
Helix 58
58
B
605 614Right-handed alpha
Helix 59
59
B
620 631Right-handed alpha
Helix 60
60
B
632 634Right-handed 310
Helix 61
61
B
636 649Right-handed alpha
Helix 62
62
B
681 700Right-handed alpha
Helix 63
63
B
701 706Right-handed alpha
Helix 64
64
B
707 719Right-handed alpha
Helix 65
65
B
723 740Right-handed alpha
Helix 66
66
B
770 774Right-handed 310
Helix 67
67
B
780 798Right-handed alpha
Helix 68
68
B
800 811Right-handed 310
Helix 69
69
B
813 818Right-handed alpha
Helix 70
70
B
818 841Right-handed alpha
Helix 71
71
B
844 865Right-handed alpha
Helix 72
72
B
867 879Right-handed alpha
Helix 73
73
B
880 885Right-handed alpha
Helix 74
74
B
886 892Right-handed alpha
Helix 75
75
B
894 906Right-handed alpha
Helix 76
76
B
908 922Right-handed alpha
Helix 77
77
B
930 943Right-handed alpha
Helix 78
78
B
957 974Right-handed alpha
Helix 79
79
B
984 993Right-handed alpha
Helix 80
80
B
1001 1017Right-handed alpha
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There are 6 sheets in PDB entry 1XDV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
429 430first strand
Strand 2
A
488 495parallel
Strand 3
A
467 472anti-parallel
Strand 4
A
459 464anti-parallel
Strand 5
A
444 452anti-parallel
Strand 6
A
524 527anti-parallel
Strand 7
A
513 516anti-parallel
Strand 8
A
500 503anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
586 588first strand
Strand 2
A
601 604anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
947 950first strand
Strand 2
A
953 956anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
429 430first strand
Strand 2
B
488 495parallel
Strand 3
B
467 472anti-parallel
Strand 4
B
459 464anti-parallel
Strand 5
B
444 452anti-parallel
Strand 6
B
524 527anti-parallel
Strand 7
B
513 516anti-parallel
Strand 8
B
500 503anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
586 588first strand
Strand 2
B
601 604anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
947 950first strand
Strand 2
B
953 956anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il