Analysis of interatomic Contacts of Structural Units in PDB entry:
1XFJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1XFJ entry

There is 1 chain in PDB entry 1XFJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 5GLU 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1XFJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 16Right-handed alpha
Helix 2
2
A
33 37Right-handed 310
Helix 3
3
A
48 63Right-handed alpha
Helix 4
4
A
66 68Right-handed 310
Helix 5
5
A
133 140Right-handed alpha
Helix 6
6
A
140 152Right-handed alpha
Helix 7
7
A
155 158Right-handed 310
Helix 8
8
A
176 186Right-handed alpha
Helix 9
9
A
188 191Right-handed 310
Helix 10
10
A
205 217Right-handed alpha
Helix 11
11
A
238 245Right-handed alpha
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There are 3 sheets in PDB entry 1XFJ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
20 25anti-parallel
Strand 3
A
253 259anti-parallel
Strand 4
A
106 111anti-parallel
Strand 5
A
70 72parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 83first strand
Strand 2
A
97 100parallel
Strand 3
A
126 132anti-parallel
Strand 4
A
115 121anti-parallel
Strand 5
A
160 163anti-parallel
Strand 6
A
221 224parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 175first strand
Strand 2
A
201 204anti-parallel
Strand 3
A
193 195anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il