Analysis of interatomic Contacts of Structural Units in PDB entry:
1XIY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1XIY entry

There are 4 chains in PDB entry 1XIY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 58
A
 SER 60ASN 180
B
 GLU 3THR 58
B
 SER 60ASN 180
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1XIY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 20Right-handed alpha
Helix 2
2
A
37 41Right-handed alpha
Helix 3
3
A
56 62Right-handed alpha
Helix 4
4
A
62 70Right-handed alpha
Helix 5
5
A
70 76Right-handed alpha
Helix 6
6
A
90 101Right-handed alpha
Helix 7
7
A
114 120Right-handed alpha
Helix 8
8
A
127 130Right-handed 310
Helix 9
9
A
169 179Right-handed alpha
Helix 10
10
B
16 20Right-handed alpha
Helix 11
11
B
37 41Right-handed alpha
Helix 12
12
B
56 62Right-handed alpha
Helix 13
13
B
62 70Right-handed alpha
Helix 14
14
B
70 76Right-handed alpha
Helix 15
15
B
90 101Right-handed alpha
Helix 16
16
B
114 120Right-handed alpha
Helix 17
17
B
127 130Right-handed 310
Helix 18
18
B
169 179Right-handed alpha
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There are 5 sheets in PDB entry 1XIY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 36first strand
Strand 2
A
11 15anti-parallel
Strand 3
A
107 110anti-parallel
Strand 4
A
82 87parallel
Strand 5
A
45 50parallel
Strand 6
A
138 143anti-parallel
Strand 7
A
146 152anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 125first strand
Strand 2
A
133 135anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 15first strand
Strand 2
B
32 36anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 110first strand
Strand 2
B
82 87parallel
Strand 3
B
45 50parallel
Strand 4
B
138 143anti-parallel
Strand 5
B
146 152anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 125first strand
Strand 2
B
133 135anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il