Analysis of interatomic Contacts of Structural Units in PDB entry:
1XJF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1XJF entry

There are 2 chains in PDB entry 1XJF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 632
B
 MET 1SER 632
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 1XJF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 12Right-handed alpha
Helix 2
2
A
16 27Right-handed alpha
Helix 3
3
A
40 54Right-handed alpha
Helix 4
4
A
55 59Right-handed 310
Helix 5
5
A
66 84Right-handed alpha
Helix 6
6
A
90 97Right-handed alpha
Helix 7
7
A
102 107Right-handed alpha
Helix 8
8
A
109 113Right-handed 310
Helix 9
9
A
114 125Right-handed alpha
Helix 10
10
A
142 159Right-handed alpha
Helix 11
11
A
186 201Right-handed alpha
Helix 12
12
A
221 227Right-handed alpha
Helix 13
13
A
250 260Right-handed alpha
Helix 14
14
A
279 294Right-handed alpha
Helix 15
15
A
300 307Right-handed alpha
Helix 16
16
A
350 372Right-handed alpha
Helix 17
17
A
376 387Right-handed alpha
Helix 18
18
A
395 403Right-handed alpha
Helix 19
19
A
409 439Right-handed alpha
Helix 20
20
A
443 447Right-handed 310
Helix 21
21
A
465 476Right-handed alpha
Helix 22
22
A
491 498Right-handed alpha
Helix 23
23
A
530 535Right-handed alpha
Helix 24
24
A
538 553Right-handed alpha
Helix 25
25
A
562 569Right-handed alpha
Helix 26
26
A
571 575Right-handed 310
Helix 27
27
A
576 589Right-handed alpha
Helix 28
28
A
606 620Right-handed alpha
Helix 29
29
B
2 12Right-handed alpha
Helix 30
30
B
16 27Right-handed alpha
Helix 31
31
B
40 54Right-handed alpha
Helix 32
32
B
55 59Right-handed 310
Helix 33
33
B
66 84Right-handed alpha
Helix 34
34
B
90 97Right-handed alpha
Helix 35
35
B
102 107Right-handed alpha
Helix 36
36
B
109 113Right-handed 310
Helix 37
37
B
114 124Right-handed alpha
Helix 38
38
B
142 159Right-handed alpha
Helix 39
39
B
186 201Right-handed alpha
Helix 40
40
B
221 227Right-handed alpha
Helix 41
41
B
250 260Right-handed alpha
Helix 42
42
B
279 294Right-handed alpha
Helix 43
43
B
300 307Right-handed alpha
Helix 44
44
B
350 372Right-handed alpha
Helix 45
45
B
376 387Right-handed alpha
Helix 46
46
B
395 404Right-handed alpha
Helix 47
47
B
409 439Right-handed alpha
Helix 48
48
B
441 447Right-handed 310
Helix 49
49
B
465 476Right-handed alpha
Helix 50
50
B
491 498Right-handed alpha
Helix 51
51
B
530 537Right-handed alpha
Helix 52
52
B
542 553Right-handed alpha
Helix 53
53
B
562 569Right-handed alpha
Helix 54
54
B
571 575Right-handed 310
Helix 55
55
B
576 589Right-handed alpha
Helix 56
56
B
606 620Right-handed alpha
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There are 11 sheets in PDB entry 1XJF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
335 339anti-parallel
Strand 3
A
390 394parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 136first strand
Strand 2
A
162 166parallel
Strand 3
A
211 216parallel
Strand 4
A
241 246parallel
Strand 5
A
297 299parallel
Strand 6
A
624 629anti-parallel
Strand 7
A
598 601parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 267first strand
Strand 2
A
274 278anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 319first strand
Strand 2
A
326 327anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 345first strand
Strand 2
A
348 349anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 513first strand
Strand 2
A
527 529anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 89first strand
Strand 2
B
335 339anti-parallel
Strand 3
B
390 394parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 136first strand
Strand 2
B
162 166parallel
Strand 3
B
211 216parallel
Strand 4
B
241 246parallel
Strand 5
B
297 299parallel
Strand 6
B
624 629anti-parallel
Strand 7
B
598 601parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
263 266first strand
Strand 2
B
275 278anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
318 319first strand
Strand 2
B
326 327anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
344 345first strand
Strand 2
B
348 349anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il