Analysis of interatomic Contacts of Structural Units in PDB entry:
1XKF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1XKF entry

There are 2 chains in PDB entry 1XKF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2PRO 124
B
 MET 1LEU 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1XKF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 8Right-handed alpha
Helix 2
2
A
20 31Right-handed alpha
Helix 3
3
A
41 43Right-handed 310
Helix 4
4
A
51 57Right-handed alpha
Helix 5
5
A
58 62Right-handed 310
Helix 6
6
A
69 74Right-handed alpha
Helix 7
7
A
86 98Right-handed alpha
Helix 8
8
A
116 123Right-handed alpha
Helix 9
9
B
3 8Right-handed alpha
Helix 10
10
B
20 31Right-handed alpha
Helix 11
11
B
41 43Right-handed 310
Helix 12
12
B
51 57Right-handed alpha
Helix 13
13
B
58 62Right-handed 310
Helix 14
14
B
69 75Right-handed alpha
Helix 15
15
B
86 98Right-handed alpha
Helix 16
16
B
116 122Right-handed alpha
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There are 4 sheets in PDB entry 1XKF. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 10first strand
Strand 2
A
109 115anti-parallel
Strand 3
A
101 106anti-parallel
Strand 4
A
81 82parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 16first strand
Strand 2
A
35 39parallel
Strand 3
A
45 50anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 10first strand
Strand 2
B
109 115anti-parallel
Strand 3
B
101 106anti-parallel
Strand 4
B
81 82parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 16first strand
Strand 2
B
35 40parallel
Strand 3
B
44 50anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il