Analysis of interatomic Contacts of Structural Units in PDB entry:
1XMB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1XMB entry

There is 1 chain in PDB entry 1XMB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 37SER 428
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 1XMB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
37 44Right-handed alpha
Helix 2
2
A
44 61Right-handed alpha
Helix 3
3
A
68 83Right-handed alpha
Helix 4
4
A
138 156Right-handed alpha
Helix 5
5
A
157 160Right-handed 310
Helix 6
6
A
176 184Right-handed alpha
Helix 7
7
A
239 254Right-handed alpha
Helix 8
8
A
261 264Right-handed 310
Helix 9
9
A
297 316Right-handed alpha
Helix 10
10
A
325 329Right-handed 310
Helix 11
11
A
338 354Right-handed alpha
Helix 12
12
A
369 375Right-handed alpha
Helix 13
13
A
404 406Right-handed 310
Helix 14
14
A
407 428Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 1XMB. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 90first strand
Strand 2
A
94 100anti-parallel
Strand 3
A
163 169anti-parallel
Strand 4
A
106 112parallel
Strand 5
A
190 203parallel
Strand 6
A
379 387parallel
Strand 7
A
207 209anti-parallel
Strand 8
A
358 360parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 215first strand
Strand 2
A
335 337anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 274first strand
Strand 2
A
285 294anti-parallel
Strand 3
A
217 227anti-parallel
Strand 4
A
318 323anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il