Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 1XOF entry
There are 8 chains in PDB entry 1XOF
(CSU analysis of residue contacts immediately below table)
| Chain ID |
Initial residue | Terminal residue |
A
|
TYR 101 | ILE 103 |
A
|
SER 105 | PHE 108 |
A
|
ASP 110 | ALA 119 |
A
|
GLY 121 | GLY 121 |
B
|
TYR 201 | ILE 203 |
B
|
SER 205 | PHE 208 |
B
|
ASP 210 | ALA 219 |
B
|
GLY 221 | GLY 221 |
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There are 2
helices in PDB entry 1XOF. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
| Helix 1 |
1 | A
| 107 |
120 | Right-handed alpha |
| Helix 2 |
2 | B
| 208 |
219 | Right-handed alpha |
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There is
1 sheet ( A) in PDB entry 1XOF.
There are 2
strands in A sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
| Strand 1 |
B
| 202 |
203 | first strand |
| Strand 2 |
B
| 206 |
207 | anti-parallel |
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Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il