Analysis of interatomic Contacts of Structural Units in PDB entry:
1XP5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1XP5 entry

There is 1 chain in PDB entry 1XP5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1GLY 994
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 1XP5. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
8 17Right-handed alpha
Helix 2
2
A
25 37Right-handed alpha
Helix 3
3
A
52 58Right-handed alpha
Helix 4
4
A
59 78Right-handed alpha
Helix 5
5
A
88 107Right-handed alpha
Helix 6
6
A
114 121Right-handed alpha
Helix 7
7
A
143 145Right-handed 310
Helix 8
8
A
178 181Right-handed 310
Helix 9
9
A
200 204Right-handed 310
Helix 10
10
A
226 229Right-handed 310
Helix 11
11
A
230 242Right-handed alpha
Helix 12
12
A
247 275Right-handed alpha
Helix 13
13
A
276 279Right-handed 310
Helix 14
14
A
298 307Right-handed alpha
Helix 15
15
A
310 329Right-handed alpha
Helix 16
16
A
335 342Right-handed alpha
Helix 17
17
A
403 407Right-handed 310
Helix 18
18
A
408 420Right-handed alpha
Helix 19
19
A
439 453Right-handed alpha
Helix 20
20
A
465 468Right-handed 310
Helix 21
21
A
469 478Right-handed alpha
Helix 22
22
A
517 524Right-handed alpha
Helix 23
23
A
538 553Right-handed alpha
Helix 24
24
A
572 576Right-handed 310
Helix 25
25
A
580 582Right-handed 310
Helix 26
26
A
583 588Right-handed alpha
Helix 27
27
A
606 617Right-handed alpha
Helix 28
28
A
628 637Right-handed alpha
Helix 29
29
A
655 661Right-handed alpha
Helix 30
30
A
662 673Right-handed alpha
Helix 31
31
A
680 693Right-handed alpha
Helix 32
32
A
707 712Right-handed alpha
Helix 33
33
A
724 731Right-handed alpha
Helix 34
34
A
740 764Right-handed alpha
Helix 35
35
A
765 781Right-handed alpha
Helix 36
36
A
788 798Right-handed alpha
Helix 37
37
A
800 808Right-handed alpha
Helix 38
38
A
831 848Right-handed alpha
Helix 39
39
A
851 855Right-handed 310
Helix 40
40
A
888 893Right-handed 310
Helix 41
41
A
896 915Right-handed alpha
Helix 42
42
A
926 929Right-handed 310
Helix 43
43
A
930 945Right-handed alpha
Helix 44
44
A
951 958Right-handed alpha
Helix 45
45
A
965 975Right-handed alpha
Helix 46
46
A
975 990Right-handed alpha
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There are 6 sheets in PDB entry 1XP5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
138 141first strand
Strand 2
A
126 130anti-parallel
Strand 3
A
150 154anti-parallel
Strand 4
A
218 225anti-parallel
Strand 5
A
162 168anti-parallel
Strand 6
A
207 208anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
186 188first strand
Strand 2
A
174 176anti-parallel
Strand 3
A
213 216anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
331 333first strand
Strand 2
A
733 735anti-parallel
Strand 3
A
716 720parallel
Strand 4
A
698 702parallel
Strand 5
A
347 350parallel
Strand 6
A
620 624parallel
Strand 7
A
675 677parallel
Strand 8
A
653 654parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
400 401first strand
Strand 2
A
395 397anti-parallel
Strand 3
A
376 384anti-parallel
Strand 4
A
362 373anti-parallel
Strand 5
A
591 600anti-parallel
Strand 6
A
560 567anti-parallel
Strand 7
A
511 516anti-parallel
Strand 8
A
493 500anti-parallel
Strand 9
A
479 485anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
400 401first strand
Strand 2
A
395 397anti-parallel
Strand 3
A
376 384anti-parallel
Strand 4
A
362 373anti-parallel
Strand 5
A
591 600anti-parallel
Strand 6
A
525 530parallel
Strand 7
A
533 536anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
424 428first strand
Strand 2
A
433 437anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il