Analysis of interatomic Contacts of Structural Units in PDB entry:
1XP8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1XP8 entry

There is 1 chain in PDB entry 1XP8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 15ARG 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1XP8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 34Right-handed alpha
Helix 2
2
A
56 63Right-handed alpha
Helix 3
3
A
83 98Right-handed alpha
Helix 4
4
A
112 119Right-handed alpha
Helix 5
5
A
122 126Right-handed 310
Helix 6
6
A
133 146Right-handed alpha
Helix 7
7
A
177 195Right-handed alpha
Helix 8
8
A
223 231Right-handed alpha
Helix 9
9
A
282 294Right-handed alpha
Helix 10
10
A
314 323Right-handed alpha
Helix 11
11
A
325 341Right-handed alpha
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There are 3 sheets in PDB entry 1XP8. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 52first strand
Strand 2
A
68 69anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 129first strand
Strand 2
A
102 106parallel
Strand 3
A
152 156parallel
Strand 4
A
200 206parallel
Strand 5
A
73 78parallel
Strand 6
A
233 240parallel
Strand 7
A
252 262anti-parallel
Strand 8
A
270 276anti-parallel
Strand 9
A
280 281anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 300first strand
Strand 2
A
303 305anti-parallel
Strand 3
A
310 313anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il