Analysis of interatomic Contacts of Structural Units in PDB entry:
1XXU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1XXU entry

There are 4 chains in PDB entry 1XXU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 153
B
 MET 1ALA 153
C
 MET 1ALA 153
D
 MET 1ALA 153
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1XXU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 27Right-handed 310
Helix 2
2
A
42 55Right-handed alpha
Helix 3
3
A
55 60Right-handed alpha
Helix 4
4
A
73 85Right-handed alpha
Helix 5
5
A
98 104Right-handed alpha
Helix 6
6
A
140 151Right-handed alpha
Helix 7
7
B
24 27Right-handed 310
Helix 8
8
B
42 55Right-handed alpha
Helix 9
9
B
55 60Right-handed alpha
Helix 10
10
B
73 85Right-handed alpha
Helix 11
11
B
98 104Right-handed alpha
Helix 12
12
B
140 153Right-handed alpha
Helix 13
13
C
24 27Right-handed 310
Helix 14
14
C
42 55Right-handed alpha
Helix 15
15
C
56 59Right-handed 310
Helix 16
16
C
73 85Right-handed alpha
Helix 17
17
C
98 104Right-handed alpha
Helix 18
18
C
140 151Right-handed alpha
Helix 19
19
D
24 27Right-handed 310
Helix 20
20
D
42 55Right-handed alpha
Helix 21
21
D
55 60Right-handed alpha
Helix 22
22
D
73 85Right-handed alpha
Helix 23
23
D
98 104Right-handed alpha
Helix 24
24
D
140 151Right-handed alpha
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There are 10 sheets in PDB entry 1XXU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 14first strand
Strand 2
A
20 22anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 92first strand
Strand 2
A
64 70parallel
Strand 3
A
31 36parallel
Strand 4
A
117 121anti-parallel
Strand 5
A
127 132anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 108first strand
Strand 2
A
113 114anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 22first strand
Strand 2
B
12 15anti-parallel
Strand 3
B
90 92anti-parallel
Strand 4
B
64 70parallel
Strand 5
B
31 36parallel
Strand 6
B
116 121anti-parallel
Strand 7
B
127 133anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 108first strand
Strand 2
B
113 114anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 14first strand
Strand 2
C
20 22anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
90 92first strand
Strand 2
C
64 70parallel
Strand 3
C
31 36parallel
Strand 4
C
116 121anti-parallel
Strand 5
C
127 133anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
107 108first strand
Strand 2
C
113 114anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
20 22first strand
Strand 2
D
12 15anti-parallel
Strand 3
D
90 92anti-parallel
Strand 4
D
64 70parallel
Strand 5
D
31 36parallel
Strand 6
D
117 121anti-parallel
Strand 7
D
127 132anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
107 108first strand
Strand 2
D
113 114anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il