Analysis of interatomic Contacts of Structural Units in PDB entry:
1Y07


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Y07 entry

There are 4 chains in PDB entry 1Y07 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 3LYS 128
B
 GLY 2LYS 128
C
 MET 1LYS 128
D
 GLY 2LYS 128
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 1Y07. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
46 51Right-handed alpha
Helix 2
2
B
46 51Right-handed alpha
Helix 3
3
C
46 51Right-handed alpha
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There are 10 sheets in PDB entry 1Y07. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 8first strand
Strand 2
A
17 20anti-parallel
Strand 3
B
16 20anti-parallel
Strand 4
B
5 9anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 36first strand
Strand 2
A
27 30anti-parallel
Strand 3
B
27 29anti-parallel
Strand 4
B
34 36anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 57first strand
Strand 2
A
60 65anti-parallel
Strand 3
A
101 105anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 127first strand
Strand 2
A
112 119anti-parallel
Strand 3
A
78 85anti-parallel
Strand 4
A
89 93anti-parallel
Strand 5
B
88 93anti-parallel
Strand 6
B
78 85anti-parallel
Strand 7
B
112 119anti-parallel
Strand 8
B
123 127anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 57first strand
Strand 2
B
60 65anti-parallel
Strand 3
B
101 105anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 9first strand
Strand 2
C
16 20anti-parallel
Strand 3
D
16 20anti-parallel
Strand 4
D
5 9anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 36first strand
Strand 2
C
27 30anti-parallel
Strand 3
D
27 30anti-parallel
Strand 4
D
33 36anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
52 57first strand
Strand 2
C
60 65anti-parallel
Strand 3
C
101 105anti-parallel
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There are 9 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
123 127first strand
Strand 2
C
112 119anti-parallel
Strand 3
C
78 85anti-parallel
Strand 4
C
88 93anti-parallel
Strand 5
D
88 93anti-parallel
Strand 6
D
78 85anti-parallel
Strand 7
D
112 119anti-parallel
Strand 8
D
123 127anti-parallel
Strand 9
D
40 41parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
52 57first strand
Strand 2
D
60 65anti-parallel
Strand 3
D
101 105anti-parallel
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