Analysis of interatomic Contacts of Structural Units in PDB entry:
1Y08


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Y08 entry

There is 1 chain in PDB entry 1Y08 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 49ASN 339
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 1Y08. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
93 110Right-handed alpha
Helix 2
2
A
110 121Right-handed alpha
Helix 3
3
A
122 124Right-handed 310
Helix 4
4
A
137 143Right-handed alpha
Helix 5
5
A
150 159Right-handed alpha
Helix 6
6
A
172 181Right-handed alpha
Helix 7
7
A
216 220Right-handed 310
Helix 8
8
A
231 245Right-handed alpha
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There are 2 sheets in PDB entry 1Y08. Click on sheet of interest to get list of strands forming it: A, B,

There are 14 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 52first strand
Strand 2
A
262 271anti-parallel
Strand 3
A
248 253anti-parallel
Strand 4
A
320 328anti-parallel
Strand 5
A
222 226anti-parallel
Strand 6
A
320 328anti-parallel
Strand 7
A
306 309anti-parallel
Strand 8
A
293 300anti-parallel
Strand 9
A
277 283anti-parallel
Strand 10
A
262 271anti-parallel
Strand 11
A
277 283anti-parallel
Strand 12
A
293 300anti-parallel
Strand 13
A
69 71anti-parallel
Strand 14
A
63 64anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 129first strand
Strand 2
A
132 136anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il