Analysis of interatomic Contacts of Structural Units in PDB entry:
1Y0B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Y0B entry

There are 4 chains in PDB entry 1Y0B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -1GLU 191
B
 SER -2VAL 192
C
 SER -2VAL 189
D
 SER -2GLU 191
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 1Y0B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-1 12Right-handed alpha
Helix 2
2
A
31 46Right-handed alpha
Helix 3
3
A
61 73Right-handed alpha
Helix 4
4
A
112 114Right-handed 310
Helix 5
5
A
130 143Right-handed alpha
Helix 6
6
A
160 168Right-handed alpha
Helix 7
7
B
-1 12Right-handed alpha
Helix 8
8
B
31 46Right-handed alpha
Helix 9
9
B
61 73Right-handed alpha
Helix 10
10
B
112 114Right-handed 310
Helix 11
11
B
130 143Right-handed alpha
Helix 12
12
B
160 168Right-handed alpha
Helix 13
13
B
181 185Right-handed 310
Helix 14
14
C
-1 12Right-handed alpha
Helix 15
15
C
31 47Right-handed alpha
Helix 16
16
C
61 73Right-handed alpha
Helix 17
17
C
112 114Right-handed 310
Helix 18
18
C
130 143Right-handed alpha
Helix 19
19
C
160 168Right-handed alpha
Helix 20
20
C
181 185Right-handed 310
Helix 21
21
D
-2 12Right-handed alpha
Helix 22
22
D
31 46Right-handed alpha
Helix 23
23
D
61 73Right-handed alpha
Helix 24
24
D
112 114Right-handed 310
Helix 25
25
D
130 143Right-handed alpha
Helix 26
26
D
160 168Right-handed alpha
Helix 27
27
D
181 185Right-handed 310
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There are 12 sheets in PDB entry 1Y0B. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 15first strand
Strand 2
A
19 21anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 30first strand
Strand 2
B
76 79anti-parallel
Strand 3
B
53 57parallel
Strand 4
B
119 127parallel
Strand 5
B
146 156parallel
Strand 6
B
172 180parallel
Strand 7
B
187 188anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
172 180anti-parallel
Strand 3
A
146 156parallel
Strand 4
A
119 127parallel
Strand 5
A
53 57parallel
Strand 6
A
76 79parallel
Strand 7
B
29 30anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 98first strand
Strand 2
A
103 110anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 14first strand
Strand 2
B
20 21anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 97first strand
Strand 2
B
104 110anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
13 15first strand
Strand 2
C
19 21anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
29 30first strand
Strand 2
D
76 79anti-parallel
Strand 3
D
53 57parallel
Strand 4
D
119 127parallel
Strand 5
D
146 156parallel
Strand 6
D
172 180parallel
Strand 7
D
187 188anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
187 188first strand
Strand 2
C
172 180anti-parallel
Strand 3
C
146 156parallel
Strand 4
C
119 127parallel
Strand 5
C
53 57parallel
Strand 6
C
76 79parallel
Strand 7
D
29 30anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
91 97first strand
Strand 2
C
104 110anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
13 14first strand
Strand 2
D
20 21anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
91 98first strand
Strand 2
D
103 110anti-parallel
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