Analysis of interatomic Contacts of Structural Units in PDB entry:
1Y0E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Y0E entry

There are 2 chains in PDB entry 1Y0E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0GLU 221
B
 ALA 0GLU 221
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1Y0E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 35Right-handed alpha
Helix 2
2
A
43 54Right-handed alpha
Helix 3
3
A
76 87Right-handed alpha
Helix 4
4
A
104 116Right-handed alpha
Helix 5
5
A
127 137Right-handed alpha
Helix 6
6
A
159 173Right-handed alpha
Helix 7
7
A
185 195Right-handed alpha
Helix 8
8
A
203 208Right-handed alpha
Helix 9
9
A
208 219Right-handed alpha
Helix 10
10
B
20 35Right-handed alpha
Helix 11
11
B
43 52Right-handed alpha
Helix 12
12
B
76 87Right-handed alpha
Helix 13
13
B
104 116Right-handed alpha
Helix 14
14
B
127 137Right-handed alpha
Helix 15
15
B
159 173Right-handed alpha
Helix 16
16
B
185 195Right-handed alpha
Helix 17
17
B
203 208Right-handed alpha
Helix 18
18
B
208 219Right-handed alpha
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There are 2 sheets in PDB entry 1Y0E. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 9first strand
Strand 2
A
38 42parallel
Strand 3
A
58 61parallel
Strand 4
A
90 94parallel
Strand 5
A
120 124parallel
Strand 6
A
141 143parallel
Strand 7
A
176 180parallel
Strand 8
A
199 202parallel
Strand 9
A
5 9parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 9first strand
Strand 2
B
38 42parallel
Strand 3
B
58 61parallel
Strand 4
B
90 94parallel
Strand 5
B
120 124parallel
Strand 6
B
141 143parallel
Strand 7
B
176 180parallel
Strand 8
B
199 202parallel
Strand 9
B
6 9parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il