Analysis of interatomic Contacts of Structural Units in PDB entry:
1Y0G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Y0G entry

There are 4 chains in PDB entry 1Y0G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 23LYS 191
B
 ALA 23LYS 191
C
 ALA 23LYS 191
D
 ALA 23LYS 191
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1Y0G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
65 69Right-handed 310
Helix 2
2
A
84 93Right-handed alpha
Helix 3
3
A
164 167Right-handed 310
Helix 4
4
A
173 176Right-handed 310
Helix 5
5
B
65 69Right-handed 310
Helix 6
6
B
84 93Right-handed alpha
Helix 7
7
B
164 167Right-handed 310
Helix 8
8
B
173 176Right-handed 310
Helix 9
9
C
65 69Right-handed 310
Helix 10
10
C
84 93Right-handed alpha
Helix 11
11
C
164 167Right-handed 310
Helix 12
12
D
65 69Right-handed 310
Helix 13
13
D
84 93Right-handed alpha
Helix 14
14
D
164 167Right-handed 310
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There are 4 sheets in PDB entry 1Y0G. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 81first strand
Strand 2
A
46 52anti-parallel
Strand 3
A
34 42anti-parallel
Strand 4
A
178 189anti-parallel
Strand 5
A
151 162anti-parallel
Strand 6
A
130 145anti-parallel
Strand 7
A
118 127anti-parallel
Strand 8
A
104 115anti-parallel
Strand 9
A
70 76anti-parallel
Strand 10
A
55 60anti-parallel
Strand 11
A
24 27anti-parallel
Strand 12
A
178 189anti-parallel
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There are 12 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 81first strand
Strand 2
B
46 52anti-parallel
Strand 3
B
34 42anti-parallel
Strand 4
B
178 189anti-parallel
Strand 5
B
151 162anti-parallel
Strand 6
B
130 145anti-parallel
Strand 7
B
118 127anti-parallel
Strand 8
B
104 115anti-parallel
Strand 9
B
70 76anti-parallel
Strand 10
B
55 60anti-parallel
Strand 11
B
24 27anti-parallel
Strand 12
B
178 189anti-parallel
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There are 12 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
80 81first strand
Strand 2
C
46 52anti-parallel
Strand 3
C
34 42anti-parallel
Strand 4
C
178 189anti-parallel
Strand 5
C
151 162anti-parallel
Strand 6
C
130 145anti-parallel
Strand 7
C
119 127anti-parallel
Strand 8
C
104 114anti-parallel
Strand 9
C
70 76anti-parallel
Strand 10
C
55 60anti-parallel
Strand 11
C
24 27anti-parallel
Strand 12
C
178 189anti-parallel
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There are 12 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
80 81first strand
Strand 2
D
46 52anti-parallel
Strand 3
D
34 42anti-parallel
Strand 4
D
178 189anti-parallel
Strand 5
D
151 162anti-parallel
Strand 6
D
130 145anti-parallel
Strand 7
D
118 127anti-parallel
Strand 8
D
104 115anti-parallel
Strand 9
D
72 76anti-parallel
Strand 10
D
55 60anti-parallel
Strand 11
D
24 27anti-parallel
Strand 12
D
178 189anti-parallel
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