Analysis of interatomic Contacts of Structural Units in PDB entry:
1Y0K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Y0K entry

There is 1 chain in PDB entry 1Y0K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1LEU 209
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 1Y0K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 24Right-handed alpha
Helix 2
2
A
25 41Right-handed alpha
Helix 3
3
A
46 48Right-handed 310
Helix 4
4
A
111 117Right-handed alpha
Helix 5
5
A
118 133Right-handed alpha
Helix 6
6
A
135 138Right-handed 310
Helix 7
7
A
161 167Right-handed alpha
Helix 8
8
A
190 195Right-handed alpha
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There are 2 sheets in PDB entry 1Y0K. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
60 62anti-parallel
Strand 3
A
65 73anti-parallel
Strand 4
A
140 146parallel
Strand 5
A
171 175parallel
Strand 6
A
179 185anti-parallel
Strand 7
A
201 202anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 110first strand
Strand 2
A
150 153parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il