Analysis of interatomic Contacts of Structural Units in PDB entry:
1Y10


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Y10 entry

There are 4 chains in PDB entry 1Y10 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 14ARG 376
B
 LEU 20ARG 376
C
 ASN 12GLY 377
D
 ASP 14ARG 376
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 1Y10. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 38Right-handed alpha
Helix 2
2
A
41 47Right-handed alpha
Helix 3
3
A
56 61Right-handed 310
Helix 4
4
A
68 77Right-handed alpha
Helix 5
5
A
79 90Right-handed alpha
Helix 6
6
A
105 113Right-handed alpha
Helix 7
7
A
114 120Right-handed alpha
Helix 8
8
A
123 154Right-handed alpha
Helix 9
9
A
159 207Right-handed alpha
Helix 10
10
A
234 253Right-handed alpha
Helix 11
11
A
273 290Right-handed alpha
Helix 12
12
A
316 328Right-handed alpha
Helix 13
13
A
337 342Right-handed alpha
Helix 14
14
B
22 38Right-handed alpha
Helix 15
15
B
53 61Right-handed 310
Helix 16
16
B
68 76Right-handed alpha
Helix 17
17
B
79 90Right-handed alpha
Helix 18
18
B
104 113Right-handed alpha
Helix 19
19
B
113 120Right-handed alpha
Helix 20
20
B
123 154Right-handed alpha
Helix 21
21
B
159 174Right-handed alpha
Helix 22
22
B
174 207Right-handed alpha
Helix 23
23
B
234 253Right-handed alpha
Helix 24
24
B
273 289Right-handed alpha
Helix 25
25
B
315 328Right-handed alpha
Helix 26
26
B
337 344Right-handed alpha
Helix 27
27
C
22 38Right-handed alpha
Helix 28
28
C
41 48Right-handed alpha
Helix 29
29
C
53 59Right-handed 310
Helix 30
30
C
68 77Right-handed alpha
Helix 31
31
C
79 90Right-handed alpha
Helix 32
32
C
104 113Right-handed alpha
Helix 33
33
C
115 120Right-handed alpha
Helix 34
34
C
123 153Right-handed alpha
Helix 35
35
C
159 207Right-handed alpha
Helix 36
36
C
234 253Right-handed alpha
Helix 37
37
C
273 291Right-handed alpha
Helix 38
38
C
315 328Right-handed alpha
Helix 39
39
C
337 344Right-handed alpha
Helix 40
40
D
21 38Right-handed alpha
Helix 41
41
D
41 48Right-handed alpha
Helix 42
42
D
53 61Right-handed 310
Helix 43
43
D
68 77Right-handed alpha
Helix 44
44
D
79 90Right-handed alpha
Helix 45
45
D
105 113Right-handed alpha
Helix 46
46
D
114 121Right-handed alpha
Helix 47
47
D
123 154Right-handed alpha
Helix 48
48
D
159 206Right-handed alpha
Helix 49
49
D
236 253Right-handed alpha
Helix 50
50
D
273 290Right-handed alpha
Helix 51
51
D
316 326Right-handed alpha
Helix 52
52
D
337 344Right-handed alpha
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There are 10 sheets in PDB entry 1Y10. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
103 104anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 263first strand
Strand 2
A
266 271anti-parallel
Strand 3
A
214 223anti-parallel
Strand 4
A
297 309anti-parallel
Strand 5
A
312 315anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 263first strand
Strand 2
A
266 271anti-parallel
Strand 3
A
214 223anti-parallel
Strand 4
A
297 309anti-parallel
Strand 5
A
333 336parallel
Strand 6
A
369 375anti-parallel
Strand 7
A
353 360anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
258 263first strand
Strand 2
B
266 271anti-parallel
Strand 3
B
214 223anti-parallel
Strand 4
B
297 309anti-parallel
Strand 5
B
312 314anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
258 263first strand
Strand 2
B
266 271anti-parallel
Strand 3
B
214 223anti-parallel
Strand 4
B
297 309anti-parallel
Strand 5
B
333 336parallel
Strand 6
B
371 375anti-parallel
Strand 7
B
353 357anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
258 263first strand
Strand 2
C
266 271anti-parallel
Strand 3
C
214 223anti-parallel
Strand 4
C
297 309anti-parallel
Strand 5
C
312 314anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
258 263first strand
Strand 2
C
266 271anti-parallel
Strand 3
C
214 223anti-parallel
Strand 4
C
297 309anti-parallel
Strand 5
C
333 336parallel
Strand 6
C
369 376anti-parallel
Strand 7
C
352 360anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
66 67first strand
Strand 2
D
103 104anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
258 263first strand
Strand 2
D
266 271anti-parallel
Strand 3
D
214 223anti-parallel
Strand 4
D
297 309anti-parallel
Strand 5
D
312 315anti-parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
258 263first strand
Strand 2
D
266 271anti-parallel
Strand 3
D
214 223anti-parallel
Strand 4
D
297 309anti-parallel
Strand 5
D
333 336parallel
Strand 6
D
369 375anti-parallel
Strand 7
D
353 360anti-parallel
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