Analysis of interatomic Contacts of Structural Units in PDB entry:
1Y11


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Y11 entry

There is 1 chain in PDB entry 1Y11 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 14GLY 377
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1Y11. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 38Right-handed alpha
Helix 2
2
A
41 47Right-handed alpha
Helix 3
3
A
53 58Right-handed alpha
Helix 4
4
A
70 77Right-handed alpha
Helix 5
5
A
79 90Right-handed alpha
Helix 6
6
A
104 112Right-handed alpha
Helix 7
7
A
114 120Right-handed alpha
Helix 8
8
A
123 152Right-handed alpha
Helix 9
9
A
159 192Right-handed alpha
Helix 10
10
A
200 206Right-handed alpha
Helix 11
11
A
225 230Right-handed alpha
Helix 12
12
A
234 250Right-handed alpha
Helix 13
13
A
273 291Right-handed alpha
Helix 14
14
A
316 328Right-handed alpha
Helix 15
15
A
337 344Right-handed alpha
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There are 2 sheets in PDB entry 1Y11. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 263first strand
Strand 2
A
266 271anti-parallel
Strand 3
A
214 223anti-parallel
Strand 4
A
297 309anti-parallel
Strand 5
A
312 315anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 263first strand
Strand 2
A
266 271anti-parallel
Strand 3
A
214 223anti-parallel
Strand 4
A
297 309anti-parallel
Strand 5
A
333 336parallel
Strand 6
A
369 375anti-parallel
Strand 7
A
353 360anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il