Analysis of interatomic Contacts of Structural Units in PDB entry:
1Y1D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Y1D entry

There are 2 chains in PDB entry 1Y1D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 10ASN 124
B
 CYS 1010PRO 1125
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 1Y1D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
74 82Right-handed alpha
Helix 2
2
B
1074 1082Right-handed alpha
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There are 3 sheets in PDB entry 1Y1D. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 24first strand
Strand 2
A
12 18anti-parallel
Strand 3
A
104 112parallel
Strand 4
A
115 123anti-parallel
Strand 5
B
1115 1123anti-parallel
Strand 6
B
1104 1112anti-parallel
Strand 7
B
1012 1018parallel
Strand 8
B
1023 1024anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 55first strand
Strand 2
A
12 18anti-parallel
Strand 3
A
104 112parallel
Strand 4
A
115 123anti-parallel
Strand 5
B
1115 1123anti-parallel
Strand 6
B
1104 1112anti-parallel
Strand 7
B
1012 1018parallel
Strand 8
B
1054 1055anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 48first strand
Strand 2
A
29 35anti-parallel
Strand 3
A
67 73anti-parallel
Strand 4
A
88 97anti-parallel
Strand 5
B
1088 1097anti-parallel
Strand 6
B
1067 1073anti-parallel
Strand 7
B
1029 1035anti-parallel
Strand 8
B
1041 1048anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il