Analysis of interatomic Contacts of Structural Units in PDB entry:
1Y43


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Y43 entry

There are 2 chains in PDB entry 1Y43 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1GLY 32
B
 GLU 3VAL 173
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 1Y43

There are 5 sheets in PDB entry 1Y43. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 4first strand
Strand 2
B
147 153parallel
Strand 3
A
7 13anti-parallel
Strand 4
B
104 110anti-parallel
Strand 5
B
4 13anti-parallel
Strand 6
B
120 121parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 52first strand
Strand 2
B
35 45anti-parallel
Strand 3
B
22 32anti-parallel
Strand 4
B
4 13anti-parallel
Strand 5
B
104 110anti-parallel
Strand 6
A
7 13anti-parallel
Strand 7
B
147 153anti-parallel
Strand 8
B
156 157anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 92first strand
Strand 2
B
74 81anti-parallel
Strand 3
B
62 71anti-parallel
Strand 4
A
17 25anti-parallel
Strand 5
B
126 136anti-parallel
Strand 6
B
139 141anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 92first strand
Strand 2
B
74 81anti-parallel
Strand 3
B
62 71anti-parallel
Strand 4
A
17 25anti-parallel
Strand 5
B
126 136anti-parallel
Strand 6
B
168 172anti-parallel
Strand 7
B
159 163anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 114first strand
Strand 2
B
117 118anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il