Analysis of interatomic Contacts of Structural Units in PDB entry:
1Y54


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Y54 entry

There is 1 chain in PDB entry 1Y54 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 3GLN 361
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 1Y54. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 23Right-handed alpha
Helix 2
2
A
65 80Right-handed alpha
Helix 3
3
A
88 92Right-handed 310
Helix 4
4
A
105 111Right-handed alpha
Helix 5
5
A
127 137Right-handed alpha
Helix 6
6
A
151 163Right-handed alpha
Helix 7
7
A
164 167Right-handed 310
Helix 8
8
A
169 178Right-handed alpha
Helix 9
9
A
179 183Right-handed 310
Helix 10
10
A
192 199Right-handed 310
Helix 11
11
A
216 221Right-handed alpha
Helix 12
12
A
226 239Right-handed alpha
Helix 13
13
A
240 243Right-handed 310
Helix 14
14
A
245 256Right-handed alpha
Helix 15
15
A
279 288Right-handed alpha
Helix 16
16
A
288 293Right-handed alpha
Helix 17
17
A
345 359Right-handed alpha
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There are 4 sheets in PDB entry 1Y54. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
37 47anti-parallel
Strand 3
A
27 34anti-parallel
Strand 4
A
335 340anti-parallel
Strand 5
A
323 328anti-parallel
Strand 6
A
311 318anti-parallel
Strand 7
A
272 275anti-parallel
Strand 8
A
265 267anti-parallel
Strand 9
A
258 262anti-parallel
Strand 10
A
299 305anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
224 225anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
A
296 297anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 203first strand
Strand 2
A
208 209anti-parallel
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