Analysis of interatomic Contacts of Structural Units in PDB entry:
1Y60


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Y60 entry

There are 5 chains in PDB entry 1Y60 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ASN 169
B
 ALA 1002ASN 1169
C
 ALA 2002ASN 2169
D
 ALA 3002ALA 3170
E
 ALA 4002ASN 4169
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 1Y60. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 20Right-handed 310
Helix 2
2
A
32 44Right-handed alpha
Helix 3
3
A
76 84Right-handed alpha
Helix 4
4
A
85 101Right-handed alpha
Helix 5
5
A
108 110Right-handed 310
Helix 6
6
A
126 147Right-handed alpha
Helix 7
7
A
151 159Right-handed alpha
Helix 8
8
A
160 162Right-handed 310
Helix 9
9
B
1016 1020Right-handed 310
Helix 10
10
B
1032 1044Right-handed alpha
Helix 11
11
B
1076 1084Right-handed alpha
Helix 12
12
B
1085 1101Right-handed alpha
Helix 13
13
B
1108 1110Right-handed 310
Helix 14
14
B
1126 1147Right-handed alpha
Helix 15
15
B
1151 1159Right-handed alpha
Helix 16
16
B
1160 1162Right-handed 310
Helix 17
17
C
2016 2020Right-handed 310
Helix 18
18
C
2032 2044Right-handed alpha
Helix 19
19
C
2076 2084Right-handed alpha
Helix 20
20
C
2085 2101Right-handed alpha
Helix 21
21
C
2108 2110Right-handed 310
Helix 22
22
C
2126 2147Right-handed alpha
Helix 23
23
C
2151 2159Right-handed alpha
Helix 24
24
C
2160 2162Right-handed 310
Helix 25
25
D
3016 3020Right-handed 310
Helix 26
26
D
3032 3044Right-handed alpha
Helix 27
27
D
3076 3084Right-handed alpha
Helix 28
28
D
3085 3101Right-handed alpha
Helix 29
29
D
3108 3110Right-handed 310
Helix 30
30
D
3126 3147Right-handed alpha
Helix 31
31
D
3151 3159Right-handed alpha
Helix 32
32
D
3160 3162Right-handed 310
Helix 33
33
E
4016 4020Right-handed 310
Helix 34
34
E
4032 4044Right-handed alpha
Helix 35
35
E
4076 4084Right-handed alpha
Helix 36
36
E
4085 4101Right-handed alpha
Helix 37
37
E
4108 4110Right-handed 310
Helix 38
38
E
4126 4147Right-handed alpha
Helix 39
39
E
4151 4159Right-handed alpha
Helix 40
40
E
4160 4162Right-handed 310
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There are 10 sheets in PDB entry 1Y60. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 14first strand
Strand 2
A
21 29anti-parallel
Strand 3
A
112 118anti-parallel
Strand 4
A
65 70parallel
Strand 5
A
52 53anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 57first strand
Strand 2
A
60 61anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1008 1014first strand
Strand 2
B
1021 1029anti-parallel
Strand 3
B
1112 1118anti-parallel
Strand 4
B
1065 1070parallel
Strand 5
B
1052 1053anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1055 1057first strand
Strand 2
B
1060 1061anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2008 2014first strand
Strand 2
C
2021 2029anti-parallel
Strand 3
C
2112 2118anti-parallel
Strand 4
C
2065 2070parallel
Strand 5
C
2052 2053anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2055 2057first strand
Strand 2
C
2060 2061anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3008 3014first strand
Strand 2
D
3021 3029anti-parallel
Strand 3
D
3112 3118anti-parallel
Strand 4
D
3065 3070parallel
Strand 5
D
3052 3053anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3055 3057first strand
Strand 2
D
3060 3061anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4008 4014first strand
Strand 2
E
4021 4029anti-parallel
Strand 3
E
4112 4118anti-parallel
Strand 4
E
4065 4070parallel
Strand 5
E
4052 4053anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4055 4057first strand
Strand 2
E
4060 4061anti-parallel
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