Analysis of interatomic Contacts of Structural Units in PDB entry:
1Y64


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Y64 entry

There are 3 chains in PDB entry 1Y64 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4GLU 72
A
 GLY 74ARG 372
B
 LYS 1350HIS 1760
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 1Y64. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
78 90Right-handed alpha
Helix 2
2
A
112 127Right-handed alpha
Helix 3
3
A
137 144Right-handed alpha
Helix 4
4
A
171 175Right-handed 310
Helix 5
5
A
181 195Right-handed alpha
Helix 6
6
A
203 208Right-handed alpha
Helix 7
7
A
209 215Right-handed alpha
Helix 8
8
A
258 263Right-handed alpha
Helix 9
9
A
264 268Right-handed 310
Helix 10
10
A
273 283Right-handed alpha
Helix 11
11
A
286 296Right-handed alpha
Helix 12
12
A
301 305Right-handed 310
Helix 13
13
A
309 321Right-handed alpha
Helix 14
14
A
334 336Right-handed 310
Helix 15
15
A
337 349Right-handed alpha
Helix 16
16
A
350 356Right-handed 310
Helix 17
17
A
358 366Right-handed alpha
Helix 18
18
A
367 370Right-handed 310
Helix 19
19
B
1377 1389Right-handed alpha
Helix 20
20
B
1391 1399Right-handed alpha
Helix 21
21
B
1422 1431Right-handed alpha
Helix 22
22
B
1432 1436Right-handed 310
Helix 23
23
B
1440 1450Right-handed alpha
Helix 24
24
B
1458 1465Right-handed alpha
Helix 25
25
B
1467 1472Right-handed alpha
Helix 26
26
B
1474 1482Right-handed alpha
Helix 27
27
B
1483 1485Right-handed 310
Helix 28
28
B
1503 1507Right-handed 310
Helix 29
29
B
1508 1519Right-handed alpha
Helix 30
30
B
1521 1538Right-handed alpha
Helix 31
31
B
1539 1561Right-handed alpha
Helix 32
32
B
1562 1580Right-handed alpha
Helix 33
33
B
1581 1585Right-handed 310
Helix 34
34
B
1590 1597Right-handed 310
Helix 35
35
B
1608 1619Right-handed alpha
Helix 36
36
B
1626 1631Right-handed alpha
Helix 37
37
B
1631 1636Right-handed alpha
Helix 38
38
B
1641 1665Right-handed alpha
Helix 39
39
B
1680 1685Right-handed alpha
Helix 40
40
B
1687 1717Right-handed alpha
Helix 41
41
B
1722 1760Right-handed alpha
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There are 5 sheets in PDB entry 1Y64. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 32first strand
Strand 2
A
16 21anti-parallel
Strand 3
A
8 10anti-parallel
Strand 4
A
103 107parallel
Strand 5
A
132 136parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
A
35 38anti-parallel
Strand 3
A
65 68anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
75 76anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 178first strand
Strand 2
A
160 163anti-parallel
Strand 3
A
152 154anti-parallel
Strand 4
A
298 300parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 241first strand
Strand 2
A
247 250anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il