Analysis of interatomic Contacts of Structural Units in PDB entry:
1Y6J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Y6J entry

There is 1 chain in PDB entry 1Y6J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 7ASN 317
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 1Y6J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 29Right-handed alpha
Helix 2
2
A
46 53Right-handed alpha
Helix 3
3
A
68 73Right-handed 310
Helix 4
4
A
91 114Right-handed alpha
Helix 5
5
A
125 138Right-handed alpha
Helix 6
6
A
149 162Right-handed alpha
Helix 7
7
A
213 231Right-handed alpha
Helix 8
8
A
235 252Right-handed alpha
Helix 9
9
A
294 315Right-handed alpha
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There are 5 sheets in PDB entry 1Y6J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
34 38parallel
Strand 3
A
10 13parallel
Strand 4
A
77 80parallel
Strand 5
A
118 121parallel
Strand 6
A
144 146parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 172first strand
Strand 2
A
191 192anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 176first strand
Strand 2
A
184 185anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 257first strand
Strand 2
A
278 281anti-parallel
Strand 3
A
284 287anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 263first strand
Strand 2
A
272 275anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il