Analysis of interatomic Contacts of Structural Units in PDB entry:
1Y6M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Y6M entry

There are 2 chains in PDB entry 1Y6M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 CYS 12LYS 157
R
 THR 3THR 206
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1Y6M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
L
18 32Right-handed alpha
Helix 2
2
L
33 41Right-handed alpha
Helix 3
3
L
51 57Right-handed alpha
Helix 4
4
L
60 75Right-handed alpha
Helix 5
5
L
75 84Right-handed alpha
Helix 6
6
L
87 98Right-handed alpha
Helix 7
7
L
98 106Right-handed alpha
Helix 8
8
L
112 116Right-handed 310
Helix 9
9
L
119 130Right-handed alpha
Helix 10
10
L
131 155Right-handed alpha
Helix 11
11
R
63 72Right-handed 310
Helix 12
12
R
98 100Right-handed 310
Helix 13
13
R
135 140Right-handed alpha
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There are 5 sheets in PDB entry 1Y6M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
59 61first strand
Strand 2
R
21 24anti-parallel
Strand 3
R
11 16anti-parallel
Strand 4
R
102 103parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
48 55first strand
Strand 2
R
35 41anti-parallel
Strand 3
R
78 83anti-parallel
Strand 4
R
86 87anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
48 55first strand
Strand 2
R
35 41anti-parallel
Strand 3
R
78 83anti-parallel
Strand 4
R
91 92anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
110 113first strand
Strand 2
R
117 121anti-parallel
Strand 3
R
168 172anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
159 164first strand
Strand 2
R
144 152anti-parallel
Strand 3
R
179 188anti-parallel
Strand 4
R
201 204anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il