Analysis of interatomic Contacts of Structural Units in PDB entry:
1Y6N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Y6N entry

There are 2 chains in PDB entry 1Y6N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 CYS 12LYS 157
R
 GLY 2ILE 203
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1Y6N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
L
18 32Right-handed alpha
Helix 2
2
L
33 38Right-handed alpha
Helix 3
3
L
49 58Right-handed alpha
Helix 4
4
L
60 75Right-handed alpha
Helix 5
5
L
75 82Right-handed alpha
Helix 6
6
L
84 86Right-handed 310
Helix 7
7
L
87 107Right-handed alpha
Helix 8
8
L
112 116Right-handed 310
Helix 9
9
L
118 130Right-handed alpha
Helix 10
10
L
131 142Right-handed alpha
Helix 11
11
L
142 156Right-handed alpha
Helix 12
12
R
63 66Right-handed 310
Helix 13
13
R
68 72Right-handed 310
Helix 14
14
R
98 102Right-handed 310
Helix 15
15
R
135 140Right-handed alpha
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There are 5 sheets in PDB entry 1Y6N. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
11 16first strand
Strand 2
R
19 24anti-parallel
Strand 3
R
59 61anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
49 55first strand
Strand 2
R
35 42anti-parallel
Strand 3
R
75 83anti-parallel
Strand 4
R
86 87anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
49 55first strand
Strand 2
R
35 42anti-parallel
Strand 3
R
75 83anti-parallel
Strand 4
R
91 92anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
108 113first strand
Strand 2
R
117 123anti-parallel
Strand 3
R
168 172anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
160 164first strand
Strand 2
R
144 153anti-parallel
Strand 3
R
179 188anti-parallel
Strand 4
R
201 202anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il