Analysis of interatomic Contacts of Structural Units in PDB entry:
1Y6Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Y6Y entry

There are 2 chains in PDB entry 1Y6Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2ALA 21
B
 HIS 23ASP 375
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 1Y6Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 9Right-handed alpha
Helix 2
2
B
114 125Right-handed alpha
Helix 3
3
B
168 174Right-handed alpha
Helix 4
4
B
296 300Right-handed 310
Helix 5
5
B
330 334Right-handed 310
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There are 5 sheets in PDB entry 1Y6Y. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 29first strand
Strand 2
B
35 39anti-parallel
Strand 3
B
54 60anti-parallel
Strand 4
B
128 133anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 51first strand
Strand 2
B
43 47anti-parallel
Strand 3
B
182 191parallel
Strand 4
B
156 167anti-parallel
Strand 5
B
69 80anti-parallel
Strand 6
B
92 104anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 51first strand
Strand 2
B
43 47anti-parallel
Strand 3
B
182 191parallel
Strand 4
B
156 167anti-parallel
Strand 5
B
143 145anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 211first strand
Strand 2
B
214 221anti-parallel
Strand 3
B
233 241anti-parallel
Strand 4
B
285 293anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
226 228first strand
Strand 2
B
358 369parallel
Strand 3
B
336 348anti-parallel
Strand 4
B
247 260anti-parallel
Strand 5
B
267 276anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il