Analysis of interatomic Contacts of Structural Units in PDB entry:
1Y6Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Y6Z entry

There are 2 chains in PDB entry 1Y6Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 3ALA 260
B
 LEU 2ASN 258
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 1Y6Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 7Right-handed 310
Helix 2
2
A
13 26Right-handed alpha
Helix 3
3
A
56 62Right-handed alpha
Helix 4
4
A
83 88Right-handed 310
Helix 5
5
A
89 93Right-handed 310
Helix 6
6
A
118 141Right-handed alpha
Helix 7
7
A
142 163Right-handed alpha
Helix 8
8
A
166 172Right-handed alpha
Helix 9
9
A
188 194Right-handed alpha
Helix 10
10
A
209 215Right-handed alpha
Helix 11
11
A
216 218Right-handed 310
Helix 12
12
A
219 226Right-handed alpha
Helix 13
13
A
234 248Right-handed alpha
Helix 14
14
B
3 7Right-handed 310
Helix 15
15
B
13 26Right-handed alpha
Helix 16
16
B
56 60Right-handed 310
Helix 17
17
B
83 88Right-handed 310
Helix 18
18
B
89 93Right-handed 310
Helix 19
19
B
118 140Right-handed alpha
Helix 20
20
B
142 163Right-handed alpha
Helix 21
21
B
166 172Right-handed alpha
Helix 22
22
B
188 194Right-handed alpha
Helix 23
23
B
209 214Right-handed alpha
Helix 24
24
B
215 218Right-handed 310
Helix 25
25
B
219 225Right-handed alpha
Helix 26
26
B
234 248Right-handed alpha
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There are 6 sheets in PDB entry 1Y6Z. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 40first strand
Strand 2
A
44 51anti-parallel
Strand 3
A
96 101anti-parallel
Strand 4
A
71 75parallel
Strand 5
A
78 79anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 176first strand
Strand 2
A
186 187anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 232first strand
Strand 2
A
202 206parallel
Strand 3
A
254 256parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 39first strand
Strand 2
B
45 51anti-parallel
Strand 3
B
96 101anti-parallel
Strand 4
B
71 75parallel
Strand 5
B
78 81anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 176first strand
Strand 2
B
186 187anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 232first strand
Strand 2
B
202 206parallel
Strand 3
B
254 256parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il