Analysis of interatomic Contacts of Structural Units in PDB entry:
1Y79


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Y79 entry

There is 1 chain in PDB entry 1Y79 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
1
 THR 1ILE 680
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 1Y79. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
1
4 8Right-handed 310
Helix 2
2
1
12 16Right-handed 310
Helix 3
3
1
23 25Right-handed 310
Helix 4
4
1
26 46Right-handed alpha
Helix 5
5
1
57 64Right-handed alpha
Helix 6
6
1
65 82Right-handed alpha
Helix 7
7
1
84 107Right-handed alpha
Helix 8
8
1
108 121Right-handed alpha
Helix 9
9
1
128 146Right-handed alpha
Helix 10
10
1
150 181Right-handed alpha
Helix 11
11
1
188 193Right-handed 310
Helix 12
12
1
196 210Right-handed alpha
Helix 13
13
1
226 231Right-handed 310
Helix 14
14
1
234 247Right-handed alpha
Helix 15
15
1
257 275Right-handed alpha
Helix 16
16
1
279 286Right-handed alpha
Helix 17
17
1
292 325Right-handed alpha
Helix 18
18
1
332 334Right-handed 310
Helix 19
19
1
335 349Right-handed alpha
Helix 20
20
1
351 359Right-handed 310
Helix 21
21
1
360 368Right-handed alpha
Helix 22
22
1
368 378Right-handed alpha
Helix 23
23
1
460 479Right-handed alpha
Helix 24
24
1
484 488Right-handed 310
Helix 25
25
1
493 507Right-handed alpha
Helix 26
26
1
510 518Right-handed alpha
Helix 27
27
1
528 538Right-handed alpha
Helix 28
28
1
542 561Right-handed alpha
Helix 29
29
1
562 563Right-handed 310
Helix 30
30
1
564 568Right-handed 310
Helix 31
31
1
571 583Right-handed alpha
Helix 32
32
1
595 598Right-handed 310
Helix 33
33
1
599 604Right-handed alpha
Helix 34
34
1
611 631Right-handed alpha
Helix 35
35
1
635 646Right-handed alpha
Helix 36
36
1
654 664Right-handed alpha
Helix 37
37
1
669 676Right-handed alpha
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There are 2 sheets in PDB entry 1Y79. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
184 186first strand
Strand 2
1
216 218anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
380 384first strand
Strand 2
1
395 400anti-parallel
Strand 3
1
406 415anti-parallel
Strand 4
1
441 448parallel
Strand 5
1
425 430anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il