Analysis of interatomic Contacts of Structural Units in PDB entry:
1Y7E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Y7E entry

There is 1 chain in PDB entry 1Y7E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 4GLU 458
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 1Y7E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 10Right-handed 310
Helix 2
2
A
11 32Right-handed alpha
Helix 3
3
A
34 48Right-handed alpha
Helix 4
4
A
84 88Right-handed 310
Helix 5
5
A
126 131Right-handed 310
Helix 6
6
A
205 220Right-handed alpha
Helix 7
7
A
253 268Right-handed alpha
Helix 8
8
A
299 313Right-handed alpha
Helix 9
9
A
319 329Right-handed alpha
Helix 10
10
A
378 393Right-handed alpha
Helix 11
11
A
409 417Right-handed alpha
Helix 12
12
A
418 420Right-handed 310
Helix 13
13
A
442 455Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 1Y7E. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
65 67parallel
Strand 3
A
78 79anti-parallel
Strand 4
A
278 279anti-parallel
Strand 5
A
90 91parallel
Strand 6
A
330 333parallel
Strand 7
A
422 426parallel
Strand 8
A
360 365anti-parallel
Strand 9
A
396 401parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 111first strand
Strand 2
A
114 117anti-parallel
Strand 3
A
192 195anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 153first strand
Strand 2
A
135 142anti-parallel
Strand 3
A
230 235anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 242first strand
Strand 2
A
248 251anti-parallel
Strand 3
A
438 441anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 338first strand
Strand 2
A
429 430parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il