Analysis of interatomic Contacts of Structural Units in PDB entry:
1Y80


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Y80 entry

There is 1 chain in PDB entry 1Y80 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 85LEU 209
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 1Y80. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
102 115Right-handed alpha
Helix 2
2
A
127 139Right-handed alpha
Helix 3
3
A
149 152Right-handed 310
Helix 4
4
A
153 166Right-handed alpha
Helix 5
5
A
168 172Right-handed 310
Helix 6
6
A
182 190Right-handed alpha
Helix 7
7
A
197 209Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1Y80.

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 121first strand
Strand 2
A
90 95parallel
Strand 3
A
142 146parallel
Strand 4
A
173 177parallel
Strand 5
A
193 194parallel
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