Analysis of interatomic Contacts of Structural Units in PDB entry:
1Y8A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Y8A entry

There is 1 chain in PDB entry 1Y8A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN -2SER 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 1Y8A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 25Right-handed alpha
Helix 2
2
A
26 43Right-handed alpha
Helix 3
3
A
53 65Right-handed alpha
Helix 4
4
A
68 80Right-handed alpha
Helix 5
5
A
85 95Right-handed alpha
Helix 6
6
A
107 117Right-handed alpha
Helix 7
7
A
129 133Right-handed 310
Helix 8
8
A
136 153Right-handed alpha
Helix 9
9
A
154 168Right-handed alpha
Helix 10
10
A
168 177Right-handed alpha
Helix 11
11
A
182 198Right-handed alpha
Helix 12
12
A
208 210Right-handed 310
Helix 13
13
A
211 221Right-handed alpha
Helix 14
14
A
231 236Right-handed alpha
Helix 15
15
A
247 261Right-handed alpha
Helix 16
16
A
262 271Right-handed 310
Helix 17
17
A
282 284Right-handed 310
Helix 18
18
A
285 302Right-handed alpha
Helix 19
19
A
303 307Right-handed 310
Back to top of page

There is 1 sheet ( A) in PDB entry 1Y8A.

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 126first strand
Strand 2
A
98 106parallel
Strand 3
A
1 4parallel
Strand 4
A
203 206parallel
Strand 5
A
224 228parallel
Strand 6
A
240 243parallel
Strand 7
A
277 280anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il