Analysis of interatomic Contacts of Structural Units in PDB entry:
1Y8S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Y8S entry

There is 1 chain in PDB entry 1Y8S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5ALA 452
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 1Y8S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 46Right-handed alpha
Helix 2
2
A
48 53Right-handed alpha
Helix 3
3
A
63 93Right-handed alpha
Helix 4
4
A
94 116Right-handed alpha
Helix 5
5
A
116 122Right-handed alpha
Helix 6
6
A
124 148Right-handed alpha
Helix 7
7
A
159 191Right-handed alpha
Helix 8
8
A
196 201Right-handed alpha
Helix 9
9
A
203 216Right-handed alpha
Helix 10
10
A
248 254Right-handed alpha
Helix 11
11
A
258 280Right-handed alpha
Helix 12
12
A
280 286Right-handed alpha
Helix 13
13
A
295 322Right-handed alpha
Helix 14
14
A
326 348Right-handed alpha
Helix 15
15
A
352 376Right-handed alpha
Helix 16
16
A
377 379Right-handed 310
Helix 17
17
A
381 383Right-handed 310
Helix 18
18
A
384 408Right-handed alpha
Helix 19
19
A
417 441Right-handed alpha
Helix 20
20
A
442 444Right-handed 310
Helix 21
21
A
446 450Right-handed 310
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There are no sheets in PDB entry 1Y8S
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il