Analysis of interatomic Contacts of Structural Units in PDB entry:
1Y8T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Y8T entry

There are 3 chains in PDB entry 1Y8T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 6ALA 314
B
 GLY 6ALA 314
C
 GLY 6ALA 314
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1Y8T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 16Right-handed alpha
Helix 2
2
A
48 52Right-handed alpha
Helix 3
3
A
122 126Right-handed 310
Helix 4
4
A
210 222Right-handed alpha
Helix 5
5
A
276 286Right-handed alpha
Helix 6
6
B
6 16Right-handed alpha
Helix 7
7
B
47 52Right-handed alpha
Helix 8
8
B
107 111Right-handed 310
Helix 9
9
B
122 126Right-handed 310
Helix 10
10
B
210 223Right-handed alpha
Helix 11
11
B
253 258Right-handed alpha
Helix 12
12
B
276 286Right-handed alpha
Helix 13
13
C
7 16Right-handed alpha
Helix 14
14
C
47 56Right-handed alpha
Helix 15
15
C
107 111Right-handed 310
Helix 16
16
C
122 126Right-handed 310
Helix 17
17
C
210 223Right-handed alpha
Helix 18
18
C
276 285Right-handed alpha
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There are 14 sheets in PDB entry 1Y8T. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 76first strand
Strand 2
A
65 70anti-parallel
Strand 3
A
19 25anti-parallel
Strand 4
A
32 37anti-parallel
Strand 5
A
43 47anti-parallel
Strand 6
A
89 93anti-parallel
Strand 7
A
79 82anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 105first strand
Strand 2
A
179 187parallel
Strand 3
A
205 209anti-parallel
Strand 4
A
155 160anti-parallel
Strand 5
A
129 142anti-parallel
Strand 6
A
116 121anti-parallel
Strand 7
A
171 174anti-parallel
Strand 8
A
179 187anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 230first strand
Strand 2
A
312 313anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 236first strand
Strand 2
A
244 249anti-parallel
Strand 3
A
265 269anti-parallel
Strand 4
A
272 273anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 236first strand
Strand 2
A
244 249anti-parallel
Strand 3
A
265 269anti-parallel
Strand 4
A
292 298anti-parallel
Strand 5
A
304 310anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 76first strand
Strand 2
B
66 69anti-parallel
Strand 3
B
19 24anti-parallel
Strand 4
B
31 37anti-parallel
Strand 5
B
43 46anti-parallel
Strand 6
B
89 93anti-parallel
Strand 7
B
79 84anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 121first strand
Strand 2
B
129 143anti-parallel
Strand 3
B
154 160anti-parallel
Strand 4
B
205 209anti-parallel
Strand 5
B
180 187anti-parallel
Strand 6
B
172 175anti-parallel
Strand 7
B
116 121anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
244 245first strand
Strand 2
B
265 266anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
272 273first strand
Strand 2
B
268 269anti-parallel
Strand 3
B
295 296anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
292 293first strand
Strand 2
B
309 310anti-parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
75 76first strand
Strand 2
C
65 69anti-parallel
Strand 3
C
19 25anti-parallel
Strand 4
C
32 37anti-parallel
Strand 5
C
43 46anti-parallel
Strand 6
C
89 94anti-parallel
Strand 7
C
78 84anti-parallel
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There are 8 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
104 105first strand
Strand 2
C
179 187parallel
Strand 3
C
205 209anti-parallel
Strand 4
C
154 160anti-parallel
Strand 5
C
129 143anti-parallel
Strand 6
C
116 121anti-parallel
Strand 7
C
172 174anti-parallel
Strand 8
C
179 187anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
229 230first strand
Strand 2
C
312 313anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
234 236first strand
Strand 2
C
245 248anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il