Analysis of interatomic Contacts of Structural Units in PDB entry:
1YAI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1YAI entry

There are 3 chains in PDB entry 1YAI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 1	GLN 151
B	GLN 1	GLN 151
C	ASP 2	GLN 151

There are 3 helices in PDB entry 1YAI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	113	118	Right-handed alpha
Helix 2	2	B	113	118	Right-handed alpha
Helix 3	3	C	113	118	Right-handed alpha

There are 9 sheets in PDB entry 1YAI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	109	first strand
Strand 2	A	27	36	anti-parallel
Strand 3	A	14	24	anti-parallel
Strand 4	A	3	10	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	97	first strand
Strand 2	A	40	47	anti-parallel
Strand 3	A	119	127	anti-parallel
Strand 4	A	141	150	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	57	first strand
Strand 2	A	60	62	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	109	first strand
Strand 2	B	27	36	anti-parallel
Strand 3	B	14	24	anti-parallel
Strand 4	B	3	10	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	97	first strand
Strand 2	B	40	47	anti-parallel
Strand 3	B	119	127	anti-parallel
Strand 4	B	141	150	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	57	first strand
Strand 2	B	60	62	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	109	first strand
Strand 2	C	27	36	anti-parallel
Strand 3	C	14	24	anti-parallel
Strand 4	C	3	10	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	97	first strand
Strand 2	C	40	47	anti-parallel
Strand 3	C	119	127	anti-parallel
Strand 4	C	141	150	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	57	first strand
Strand 2	C	60	62	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1YAI

Analysis of interatomic Contacts of Structural Units in PDB entry:
1YAI