Analysis of interatomic Contacts of Structural Units in PDB entry:
1YAU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1YAU entry

There are 21 chains in PDB entry 1YAU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 12	LEU 233
B	ILE 12	LEU 233
C	ILE 12	LEU 233
D	ILE 12	LEU 233
E	ILE 12	LEU 233
F	ILE 12	LEU 233
G	ILE 12	LEU 233
H	THR 1	LEU 203
I	THR 1	LEU 203
J	THR 1	LEU 203
K	THR 1	LEU 203
L	THR 1	LEU 203
M	THR 1	LEU 203
N	THR 1	LEU 203
O	LYS 4	SER 231
P	LYS 4	SER 231
Q	LYS 4	SER 231
R	LYS 4	SER 231
S	LYS 4	SER 231
T	LYS 4	SER 231
U	LYS 4	SER 231

There are131 helices in PDB entry 1YAU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	21	32	Right-handed alpha
Helix 2	2	A	82	104	Right-handed alpha
Helix 3	3	A	108	123	Right-handed alpha
Helix 4	4	A	168	180	Right-handed alpha
Helix 5	5	A	185	199	Right-handed alpha
Helix 6	6	A	225	231	Right-handed alpha
Helix 7	7	B	21	32	Right-handed alpha
Helix 8	8	B	82	104	Right-handed alpha
Helix 9	9	B	108	123	Right-handed alpha
Helix 10	10	B	168	180	Right-handed alpha
Helix 11	11	B	185	200	Right-handed alpha
Helix 12	12	B	225	231	Right-handed alpha
Helix 13	13	C	21	32	Right-handed alpha
Helix 14	14	C	82	104	Right-handed alpha
Helix 15	15	C	108	123	Right-handed alpha
Helix 16	16	C	168	180	Right-handed alpha
Helix 17	17	C	185	199	Right-handed alpha
Helix 18	18	C	225	231	Right-handed alpha
Helix 19	19	D	21	32	Right-handed alpha
Helix 20	20	D	82	104	Right-handed alpha
Helix 21	21	D	108	123	Right-handed alpha
Helix 22	22	D	168	180	Right-handed alpha
Helix 23	23	D	185	199	Right-handed alpha
Helix 24	24	D	225	231	Right-handed alpha
Helix 25	25	E	21	32	Right-handed alpha
Helix 26	26	E	82	104	Right-handed alpha
Helix 27	27	E	108	123	Right-handed alpha
Helix 28	28	E	168	180	Right-handed alpha
Helix 29	29	E	185	199	Right-handed alpha
Helix 30	30	E	225	231	Right-handed alpha
Helix 31	31	F	21	32	Right-handed alpha
Helix 32	32	F	82	104	Right-handed alpha
Helix 33	33	F	108	123	Right-handed alpha
Helix 34	34	F	168	180	Right-handed alpha
Helix 35	35	F	185	199	Right-handed alpha
Helix 36	36	F	225	231	Right-handed alpha
Helix 37	37	G	21	33	Right-handed alpha
Helix 38	38	G	82	104	Right-handed alpha
Helix 39	39	G	108	123	Right-handed alpha
Helix 40	40	G	168	180	Right-handed alpha
Helix 41	41	G	185	199	Right-handed alpha
Helix 42	42	G	225	231	Right-handed alpha
Helix 43	43	H	48	71	Right-handed alpha
Helix 44	44	H	75	90	Right-handed alpha
Helix 45	45	H	130	142	Right-handed alpha
Helix 46	46	H	147	166	Right-handed alpha
Helix 47	47	H	188	200	Right-handed alpha
Helix 48	48	I	48	71	Right-handed alpha
Helix 49	49	I	75	90	Right-handed alpha
Helix 50	50	I	130	142	Right-handed alpha
Helix 51	51	I	147	166	Right-handed alpha
Helix 52	52	I	188	200	Right-handed alpha
Helix 53	53	J	48	71	Right-handed alpha
Helix 54	54	J	75	90	Right-handed alpha
Helix 55	55	J	130	142	Right-handed alpha
Helix 56	56	J	147	166	Right-handed alpha
Helix 57	57	J	188	200	Right-handed alpha
Helix 58	58	K	48	71	Right-handed alpha
Helix 59	59	K	75	89	Right-handed alpha
Helix 60	60	K	130	142	Right-handed alpha
Helix 61	61	K	147	166	Right-handed alpha
Helix 62	62	K	188	200	Right-handed alpha
Helix 63	63	L	48	71	Right-handed alpha
Helix 64	64	L	75	89	Right-handed alpha
Helix 65	65	L	130	142	Right-handed alpha
Helix 66	66	L	147	166	Right-handed alpha
Helix 67	67	L	188	200	Right-handed alpha
Helix 68	68	M	48	71	Right-handed alpha
Helix 69	69	M	75	90	Right-handed alpha
Helix 70	70	M	130	142	Right-handed alpha
Helix 71	71	M	147	166	Right-handed alpha
Helix 72	72	M	188	200	Right-handed alpha
Helix 73	73	N	48	71	Right-handed alpha
Helix 74	74	N	75	89	Right-handed alpha
Helix 75	75	N	130	142	Right-handed alpha
Helix 76	76	N	147	166	Right-handed alpha
Helix 77	77	N	188	200	Right-handed alpha
Helix 78	78	O	4	16	Right-handed alpha
Helix 79	79	O	17	30	Right-handed alpha
Helix 80	80	O	30	52	Right-handed alpha
Helix 81	81	O	57	62	Right-handed alpha
Helix 82	82	O	64	94	Right-handed alpha
Helix 83	83	O	104	122	Right-handed alpha
Helix 84	84	O	143	161	Right-handed alpha
Helix 85	85	O	176	221	Right-handed alpha
Helix 86	86	P	4	16	Right-handed alpha
Helix 87	87	P	17	30	Right-handed alpha
Helix 88	88	P	30	52	Right-handed alpha
Helix 89	89	P	56	61	Right-handed 310
Helix 90	90	P	64	94	Right-handed alpha
Helix 91	91	P	104	123	Right-handed alpha
Helix 92	92	P	143	161	Right-handed alpha
Helix 93	93	P	176	221	Right-handed alpha
Helix 94	94	Q	4	16	Right-handed alpha
Helix 95	95	Q	17	30	Right-handed alpha
Helix 96	96	Q	30	52	Right-handed alpha
Helix 97	97	Q	64	94	Right-handed alpha
Helix 98	98	Q	104	123	Right-handed alpha
Helix 99	99	Q	143	161	Right-handed alpha
Helix 100	100	Q	176	221	Right-handed alpha
Helix 101	101	R	4	16	Right-handed alpha
Helix 102	102	R	17	30	Right-handed alpha
Helix 103	103	R	30	52	Right-handed alpha
Helix 104	104	R	64	94	Right-handed alpha
Helix 105	105	R	104	123	Right-handed alpha
Helix 106	106	R	143	161	Right-handed alpha
Helix 107	107	R	176	221	Right-handed alpha
Helix 108	108	S	4	16	Right-handed alpha
Helix 109	109	S	17	30	Right-handed alpha
Helix 110	110	S	30	52	Right-handed alpha
Helix 111	111	S	57	62	Right-handed alpha
Helix 112	112	S	64	94	Right-handed alpha
Helix 113	113	S	104	123	Right-handed alpha
Helix 114	114	S	143	161	Right-handed alpha
Helix 115	115	S	176	221	Right-handed alpha
Helix 116	116	T	4	16	Right-handed alpha
Helix 117	117	T	17	30	Right-handed alpha
Helix 118	118	T	30	52	Right-handed alpha
Helix 119	119	T	56	60	Right-handed 310
Helix 120	120	T	64	94	Right-handed alpha
Helix 121	121	T	104	123	Right-handed alpha
Helix 122	122	T	143	160	Right-handed alpha
Helix 123	123	T	176	221	Right-handed alpha
Helix 124	124	U	4	16	Right-handed alpha
Helix 125	125	U	17	30	Right-handed alpha
Helix 126	126	U	30	52	Right-handed alpha
Helix 127	127	U	57	62	Right-handed alpha
Helix 128	128	U	64	94	Right-handed alpha
Helix 129	129	U	104	123	Right-handed alpha
Helix 130	130	U	143	161	Right-handed alpha
Helix 131	131	U	176	221	Right-handed alpha

There are 42 sheets in PDB entry 1YAU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	165	first strand
Strand 2	A	37	42	anti-parallel
Strand 3	A	45	50	anti-parallel
Strand 4	A	211	216	anti-parallel
Strand 5	A	222	223	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	71	first strand
Strand 2	A	74	81	anti-parallel
Strand 3	A	134	142	anti-parallel
Strand 4	A	145	151	anti-parallel
Strand 5	A	157	159	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	71	first strand
Strand 2	A	74	81	anti-parallel
Strand 3	Q	230	231	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	165	first strand
Strand 2	B	37	42	anti-parallel
Strand 3	B	45	50	anti-parallel
Strand 4	B	211	216	anti-parallel
Strand 5	B	222	223	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	71	first strand
Strand 2	B	74	81	anti-parallel
Strand 3	B	134	141	anti-parallel
Strand 4	B	146	151	anti-parallel
Strand 5	B	157	159	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	71	first strand
Strand 2	B	74	81	anti-parallel
Strand 3	R	230	231	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	165	first strand
Strand 2	C	37	42	anti-parallel
Strand 3	C	45	50	anti-parallel
Strand 4	C	211	216	anti-parallel
Strand 5	C	222	223	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	71	first strand
Strand 2	C	74	81	anti-parallel
Strand 3	C	134	141	anti-parallel
Strand 4	C	146	151	anti-parallel
Strand 5	C	157	159	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	71	first strand
Strand 2	C	74	81	anti-parallel
Strand 3	S	230	231	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	165	first strand
Strand 2	D	37	42	anti-parallel
Strand 3	D	45	50	anti-parallel
Strand 4	D	211	216	anti-parallel
Strand 5	D	222	223	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	71	first strand
Strand 2	D	74	81	anti-parallel
Strand 3	D	134	142	anti-parallel
Strand 4	D	145	151	anti-parallel
Strand 5	D	157	159	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	71	first strand
Strand 2	D	74	81	anti-parallel
Strand 3	T	230	231	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	162	165	first strand
Strand 2	E	37	42	anti-parallel
Strand 3	E	45	50	anti-parallel
Strand 4	E	211	216	anti-parallel
Strand 5	E	222	223	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	67	71	first strand
Strand 2	E	74	81	anti-parallel
Strand 3	E	134	141	anti-parallel
Strand 4	E	146	151	anti-parallel
Strand 5	E	157	159	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	67	71	first strand
Strand 2	E	74	81	anti-parallel
Strand 3	U	230	231	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	162	165	first strand
Strand 2	F	37	42	anti-parallel
Strand 3	F	45	50	anti-parallel
Strand 4	F	211	216	anti-parallel
Strand 5	F	222	223	anti-parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	67	69	first strand
Strand 2	F	74	81	anti-parallel
Strand 3	F	134	142	anti-parallel
Strand 4	F	145	151	anti-parallel
Strand 5	F	157	159	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	67	69	first strand
Strand 2	F	74	81	anti-parallel
Strand 3	O	230	231	anti-parallel

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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	162	165	first strand
Strand 2	G	37	42	anti-parallel
Strand 3	G	45	50	anti-parallel
Strand 4	G	211	216	anti-parallel
Strand 5	G	222	223	anti-parallel

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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	67	71	first strand
Strand 2	G	74	81	anti-parallel
Strand 3	G	134	141	anti-parallel
Strand 4	G	146	151	anti-parallel
Strand 5	G	157	159	anti-parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	67	71	first strand
Strand 2	G	74	81	anti-parallel
Strand 3	P	230	231	anti-parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	124	127	first strand
Strand 2	H	3	8	anti-parallel
Strand 3	H	11	16	anti-parallel
Strand 4	H	174	179	anti-parallel
Strand 5	H	183	186	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	20	22	first strand
Strand 2	H	25	28	anti-parallel

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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	34	38	first strand
Strand 2	H	41	47	anti-parallel
Strand 3	H	97	104	anti-parallel
Strand 4	H	108	113	anti-parallel
Strand 5	H	119	122	anti-parallel

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There are 5 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	124	127	first strand
Strand 2	I	3	8	anti-parallel
Strand 3	I	11	16	anti-parallel
Strand 4	I	174	179	anti-parallel
Strand 5	I	183	186	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	20	22	first strand
Strand 2	I	25	28	anti-parallel

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There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	34	38	first strand
Strand 2	I	41	47	anti-parallel
Strand 3	I	97	104	anti-parallel
Strand 4	I	108	113	anti-parallel
Strand 5	I	119	122	anti-parallel

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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	124	127	first strand
Strand 2	J	3	8	anti-parallel
Strand 3	J	11	16	anti-parallel
Strand 4	J	174	179	anti-parallel
Strand 5	J	183	186	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	20	22	first strand
Strand 2	J	25	28	anti-parallel

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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	34	38	first strand
Strand 2	J	41	47	anti-parallel
Strand 3	J	97	104	anti-parallel
Strand 4	J	108	113	anti-parallel
Strand 5	J	119	122	anti-parallel

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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	124	127	first strand
Strand 2	K	3	8	anti-parallel
Strand 3	K	11	16	anti-parallel
Strand 4	K	174	179	anti-parallel
Strand 5	K	183	186	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	20	22	first strand
Strand 2	K	25	28	anti-parallel

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There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	34	38	first strand
Strand 2	K	41	47	anti-parallel
Strand 3	K	97	104	anti-parallel
Strand 4	K	108	113	anti-parallel
Strand 5	K	119	122	anti-parallel

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There are 5 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	124	127	first strand
Strand 2	L	3	8	anti-parallel
Strand 3	L	11	16	anti-parallel
Strand 4	L	174	179	anti-parallel
Strand 5	L	183	186	anti-parallel

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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	20	22	first strand
Strand 2	L	25	28	anti-parallel

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There are 5 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	34	38	first strand
Strand 2	L	41	47	anti-parallel
Strand 3	L	97	104	anti-parallel
Strand 4	L	108	113	anti-parallel
Strand 5	L	119	122	anti-parallel

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There are 5 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	124	127	first strand
Strand 2	M	3	8	anti-parallel
Strand 3	M	11	16	anti-parallel
Strand 4	M	174	179	anti-parallel
Strand 5	M	183	186	anti-parallel

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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	20	22	first strand
Strand 2	M	25	28	anti-parallel

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There are 5 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	34	38	first strand
Strand 2	M	41	47	anti-parallel
Strand 3	M	97	104	anti-parallel
Strand 4	M	108	113	anti-parallel
Strand 5	M	119	122	anti-parallel

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There are 5 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	124	127	first strand
Strand 2	N	3	8	anti-parallel
Strand 3	N	11	16	anti-parallel
Strand 4	N	174	179	anti-parallel
Strand 5	N	183	186	anti-parallel

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There are 2 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	20	22	first strand
Strand 2	N	25	28	anti-parallel

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There are 5 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	34	38	first strand
Strand 2	N	41	47	anti-parallel
Strand 3	N	97	104	anti-parallel
Strand 4	N	108	113	anti-parallel
Strand 5	N	119	122	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1YAU

Analysis of interatomic Contacts of Structural Units in PDB entry:
1YAU