Analysis of interatomic Contacts of Structural Units in PDB entry:
1YBE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YBE entry

There are 2 chains in PDB entry 1YBE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 8ASP 433
B
 MET 8ASP 433
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 1YBE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 15Right-handed alpha
Helix 2
2
A
35 49Right-handed alpha
Helix 3
3
A
72 84Right-handed alpha
Helix 4
4
A
89 99Right-handed alpha
Helix 5
5
A
109 118Right-handed alpha
Helix 6
6
A
140 145Right-handed alpha
Helix 7
7
A
147 165Right-handed alpha
Helix 8
8
A
168 191Right-handed alpha
Helix 9
9
A
208 224Right-handed alpha
Helix 10
10
A
232 240Right-handed alpha
Helix 11
11
A
249 259Right-handed alpha
Helix 12
12
A
261 280Right-handed alpha
Helix 13
13
A
281 284Right-handed 310
Helix 14
14
A
293 300Right-handed alpha
Helix 15
15
A
302 308Right-handed 310
Helix 16
16
A
317 332Right-handed alpha
Helix 17
17
A
335 338Right-handed 310
Helix 18
18
A
348 360Right-handed alpha
Helix 19
19
A
370 375Right-handed alpha
Helix 20
20
A
411 415Right-handed 310
Helix 21
21
A
418 430Right-handed alpha
Helix 22
22
B
8 15Right-handed alpha
Helix 23
23
B
35 49Right-handed alpha
Helix 24
24
B
66 71Right-handed alpha
Helix 25
25
B
72 84Right-handed alpha
Helix 26
26
B
89 99Right-handed alpha
Helix 27
27
B
109 117Right-handed alpha
Helix 28
28
B
140 145Right-handed alpha
Helix 29
29
B
147 165Right-handed alpha
Helix 30
30
B
168 191Right-handed alpha
Helix 31
31
B
208 224Right-handed alpha
Helix 32
32
B
232 239Right-handed alpha
Helix 33
33
B
249 258Right-handed alpha
Helix 34
34
B
261 267Right-handed alpha
Helix 35
35
B
267 280Right-handed alpha
Helix 36
36
B
281 284Right-handed 310
Helix 37
37
B
288 292Right-handed 310
Helix 38
38
B
293 300Right-handed alpha
Helix 39
39
B
302 308Right-handed 310
Helix 40
40
B
317 332Right-handed alpha
Helix 41
41
B
335 338Right-handed 310
Helix 42
42
B
348 360Right-handed alpha
Helix 43
43
B
370 375Right-handed alpha
Helix 44
44
B
411 415Right-handed 310
Helix 45
45
B
418 430Right-handed alpha
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There are 5 sheets in PDB entry 1YBE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 128first strand
Strand 2
A
133 137anti-parallel
Strand 3
A
54 60anti-parallel
Strand 4
A
393 400anti-parallel
Strand 5
A
403 404anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 230first strand
Strand 2
A
198 200parallel
Strand 3
A
364 369parallel
Strand 4
A
340 343parallel
Strand 5
A
310 311parallel
Strand 6
A
286 287parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 129first strand
Strand 2
B
132 137anti-parallel
Strand 3
B
54 60anti-parallel
Strand 4
B
393 394anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 129first strand
Strand 2
B
132 137anti-parallel
Strand 3
B
54 60anti-parallel
Strand 4
B
397 400anti-parallel
Strand 5
B
403 404anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 230first strand
Strand 2
B
198 200parallel
Strand 3
B
364 369parallel
Strand 4
B
340 343parallel
Strand 5
B
310 311parallel
Strand 6
B
286 287parallel
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